Detail information of GWHGAAEX003474/evm.TU.scaffold_135.44
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0869 | 1.00E-64 | CCAAT-binding factor, subunit A (HAP3) |
| nr | gi|641836295|gb|KDO55262.1| | 7.51E-76 | hypothetical protein CISIN_1g030647mg [Citrus sinensis] |
| Swissprot | tr|Q8VYK4|NFYB8_ARATH | 7.00E-66 | Nuclear transcription factor Y subunit B-8 |
| trEMBL | tr|A0A067EVP4|A0A067EVP4_CITSI | 3.00E-76 | Uncharacterized protein {ECO:0000313|EMBL:KDO55262.1} |
| TAIR | AT2G37060 | 1.00E-64 | nuclear factor Y, subunit B8 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000133 | 1692677 | 1698055 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003474
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00808.22 | CBFD_NFYB_HMF | 31 | 95 | 7.00E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YB |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08065 | NFYB | Antigen processing and presentation | map04612 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.980 |
| SRR2545915 | Juvenile tuber | 12.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.450 |
| SRR5643514 | five period of Gastrodia elata | 11.090 | |
| SRR5643515 | five period of Gastrodia elata | 11.900 | |
| SRR5643524 | five period of Gastrodia elata | 11.160 | |
| SRR5643525 | five period of Gastrodia elata | 15.570 | |
| SRR5643528 | five period of Gastrodia elata | 21.720 | |
| SRR5643658 | five period of Gastrodia elata | 23.070 | |
| SRR5643659 | five period of Gastrodia elata | 19.190 | |
| SRR5643660 | five period of Gastrodia elata | 22.610 | |
| SRR5643661 | five period of Gastrodia elata | 21.020 | |
| SRR5643662 | five period of Gastrodia elata | 13.770 | |
| SRR5643663 | five period of Gastrodia elata | 15.330 | |
| SRR5643664 | five period of Gastrodia elata | 15.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.890 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.250 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.690 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.690 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.63 |
| Juven | Juvenile tuber | 21.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 35.46 | |
| Mother_Juven | Mother tuber of Juvenile | 38.27 |