Detail information of GWHGAAEX003476/evm.TU.scaffold_135.45
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743768904|ref|XP_010914728.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9LSQ2|PP239_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial (Precursor) |
| trEMBL | tr|M0S4B6|M0S4B6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P01750_001} |
| TAIR | AT3G16890 | 0 | pentatricopeptide (PPR) domain protein 40 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000133 | 1712585 | 1720513 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003476
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 178 | 210 | 1.60E-12 |
| PF13041.5 | PPR_2 | 218 | 264 | 2.50E-14 |
| PF01535.19 | PPR | 292 | 319 | 0.03 |
| PF13041.5 | PPR_2 | 397 | 441 | 1.30E-11 |
| PF13041.5 | PPR_2 | 463 | 511 | 3.80E-18 |
| PF13041.5 | PPR_2 | 533 | 581 | 3.50E-15 |
| PF01535.19 | PPR | 606 | 636 | 1.1 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.920 |
| SRR2545915 | Juvenile tuber | 1.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.390 |
| SRR5643514 | five period of Gastrodia elata | 1.400 | |
| SRR5643515 | five period of Gastrodia elata | 1.430 | |
| SRR5643524 | five period of Gastrodia elata | 1.460 | |
| SRR5643525 | five period of Gastrodia elata | 1.190 | |
| SRR5643528 | five period of Gastrodia elata | 0.800 | |
| SRR5643658 | five period of Gastrodia elata | 1.160 | |
| SRR5643659 | five period of Gastrodia elata | 0.740 | |
| SRR5643660 | five period of Gastrodia elata | 0.710 | |
| SRR5643661 | five period of Gastrodia elata | 0.640 | |
| SRR5643662 | five period of Gastrodia elata | 0.610 | |
| SRR5643663 | five period of Gastrodia elata | 0.500 | |
| SRR5643664 | five period of Gastrodia elata | 0.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.170 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.00 |
| Juven | Juvenile tuber | 1.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.54 | |
| Mother_Juven | Mother tuber of Juvenile | 1.01 |