Gene detail

Detail information of GWHGAAEX003477/evm.TU.scaffold_135.46

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|37522358\|ref\|NP_925735.1\|	2.00E-67	hypothetical protein glr2789 [Gloeobacter violaceus PCC 7421]
KOG	KOG1119	4.00E-173	Mitochondrial Fe-S cluster biosynthesis protein ISA2 (contains a HesB-like domain)
nr	gi\|700255915\|gb\|AIU49576.1\|	0	iron-sulfur cluster biosynthesis family protein, partial [Iris japonica]
Swissprot	tr\|Q8GW20\|Y5390_ARATH	0	Uncharacterized protein At5g03900, chloroplastic (Precursor)
trEMBL	tr\|A0A097PNJ9\|A0A097PNJ9_9ASPA	0	Iron-sulfur cluster biosynthesis family protein {ECO:0000313\|EMBL:AIU49576.1} (Fragment)
TAIR	AT5G03900	4.00E-173	Iron-sulphur cluster biosynthesis family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000133	1727315	1791842	-

Transcript Sequence
>GWHTAAEX003477 AAAAAAAAAACCCCAAATCCCTTGTGGCTAATGATACAGTGATACTGATTCTTTCCATTAACGGGGAATGCCCGATCCCGCTCTTCACCTTTTGTAGCAATGGCGTCTCTGTCTAGCAGCATCACCGTAGCAAGGCGAAATCTCTATTCGGCCTCTCAAATCCATCGAGCTGAACCCTTGGCAGTTCAAATCGGAGTTTCTCAAATCGGAACCCGCTTTCCTCTGCTCTCCATTTCTTCTCGCCAGCGGATTTCACTGCTTTCATCCAAACATAGACTTTCCCATTCAGTGTTTCGTGCGAGCGTGCAGTTACCCCCTGGAATCAGACTGGGGGGTAGAGTGGAGACGGACATGCTGCCGGCCGATGTGCGGAGGCGGACAATGGATGCCGTTGATTTTTACGGAGGGAGAGTTACGATTGGCGATGTGGCGAGCAGGGCAGGGATTAAGTTGAATGAGGCTGAGAGAGCTCTTCAGGCGCTTGCGGCAGATACCAATGGATTCTTGGAGGTTTCAGATGAAGGTGATGTTCTTTATGTCTTCCCAAATGATTACCGTTCAAAACTTGCTGCCAAATCCTTTCAAATGAAAGTCGAACCTATACTGGATAAATTGAAGGGAGCAAGTGAGTACATAATTAGGGTTTCCTTTGGGACAACGCTTATCATGTCAATTGTTCTTGTATACACAGCAATTATTGCCCTTATTTCAAGCAAAAGTGATGATGATAATCGAGGAAAACGTGGGAGGAGGACATATGATTCCGGAGTTATTGTTTACTTTAGTCCATCTGACTTGTTATGGTTTTGGGATCCTAATTATTGCAGAAAGAGGCGGCCAAGGACAATTGATGGAATGAATTTTATTGAATCTGTTTTCTCATTTGTTTTTGGCGATGGAGATCCAAACGAAGGACTTGAAGAGGAGAGGTGGAAGCTGATTGGACAATATATTTCTTCAAATGGTGGTGTTGTTGCTGCTGATGAACTTGCTCCTTACCTTGATGTGGAGCTGACGGAGAAAGCAGCTCAGGATGATTCTTATATTTTACCAGTTCTAATACGATTTGATGGACACCCAAAAGTGGATGATGAGGGAAACATTCTCTATCATTTTCCATCGTTACAACGTACAGCATCTTTCTCGAGGGTTTCTAGGAGGGAATATATTGGTAAAAAATGGTCTTCTTGGATTGATGGCATGCAGAAAAATTTTGAGGAAAATAAATGGTTATTCAGCAAGACAAGTGCATCTGAAAAAGCAATGGTTATTGGTTTGGGGGCACTCAATCTCTTTGGAGTTATTGTTCTGGGAAGAATGTTGAAGAATGTCAATGCCGCACCTTCAGGCTTTATTTCTTTTGTTGTTGACATATTTCCTCTCCTCCAGCTCTATGCCGTTTCATTTTTCACAATACCGCTGCTCAGATGGCTCCTTATGACCAAGAAGAATGCGGTCATAGAAAGCAGAAATCTTGCCCGTTTACAGCGAGCGAGAGTTCTTGAGTTACCGGATCCAACTCTAACCAGAAAACTGTTGAATGCTCGGGAGATGGCAAATCGAACTGTGATTGGATCCGACAGAATAGTGTACAGTACTGAAAAAGATGTTTTAGATCAAGACTACGAGGCCAAGGAATGGGATAGGAGATTTAGAGAACTCTAAGGGGTACGTTTCAAGACAGCGATTTACTGCTTTGAGTGAGGTTTATAACCAGATTTTATATATATATATATATA

Network for GWHGAAEX003477

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.570
SRP064423	SRR2545915	Juvenile tuber	13.490
SRP108465	SRR5643513	five period of Gastrodia elata	11.400
	SRR5643514	five period of Gastrodia elata	11.100
	SRR5643515	five period of Gastrodia elata	10.550
	SRR5643524	five period of Gastrodia elata	10.840
	SRR5643525	five period of Gastrodia elata	9.730
	SRR5643528	five period of Gastrodia elata	7.820
	SRR5643658	five period of Gastrodia elata	9.820
	SRR5643659	five period of Gastrodia elata	12.730
	SRR5643660	five period of Gastrodia elata	11.760
	SRR5643661	five period of Gastrodia elata	11.350
	SRR5643662	five period of Gastrodia elata	12.190
	SRR5643663	five period of Gastrodia elata	12.180
	SRR5643664	five period of Gastrodia elata	13.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.030
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.830
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.230
SRP279888	Gastro	Gastrodia elata tuber	11.54
	Juven	Juvenile tuber	16.18
	Mother_Gastro	Mother tuber of Gastrodia elata	9.76
	Mother_Juven	Mother tuber of Juvenile	12.97