Gene detail

Detail information of GWHGAAEX003478/evm.TU.scaffold_135.47

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|34498467\|ref\|NP_902682.1\|	4.00E-25	serine carboxypeptidase [Chromobacterium violaceum ATCC 12472]
KOG	KOG1282	2.00E-109	Serine carboxypeptidases (lysosomal cathepsin A)
nr	gi\|720013377\|ref\|XP_010260153.1\|	1.82E-118	PREDICTED: serine carboxypeptidase-like 28 [Nelumbo nucifera]
Swissprot	tr\|Q0WRX3\|SCP40_ARATH	5.00E-110	Serine carboxypeptidase-like 40 (Precursor)
trEMBL	tr\|A0A067FS79\|A0A067FS79_CITSI	8.00E-118	Carboxypeptidase {ECO:0000256\|RuleBase:RU361156}
TAIR	AT3G63470	2.00E-109	serine carboxypeptidase-like 40

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000133	1818892	1821665	+

Transcript Sequence
>GWHTAAEX003478 AGGGCATCCCCCCAAACCGCCCCCACCTATAAAATATGAACATTCACCTTCCCAATTTCGTCGATCACCAACCATGACGAAGCCTCTTCTTCCCCTCGCCCTCCTCCTCCTCCTTCCCATCCTTCTCACCTCATCTTCCGCATCCCCTAGCCGCATTATTCTCGACTTCATCGTCCAAAAAGTCACTACTGGCCTTGCCCGCCCTTTCAACATTGCCTTCCTCCCTAACGTCCCCATCTCGTCGAATCCTGGGTCGAAGAACCCCGACCTAATTTCCGCCCTTCCTGGCCAGCCCAATGGCATCACTTTCCAGCAATACTCTGGATACATTCCCATCGACGAGACAGCCGGGCGATTTTTCTTCTACTACTTCGCTGAAGCCCGGGCGAGCACCAGCAAAACTCCACTCTTTGTGTGGATCAATGGCGGACCCGGTTGCTCTTCTATTGGCTCCGGTGCTTTTCTTGAGCACGGTCCTCTGCTTGTGGGACCTGGTGGAAAAACTCTGATGGAGTCTACTTATGCTTGGAATAACTTCGCTCATGTCCTGTACGTGGACTCTCCTGTCGGCACCGGATTCTCGTACTCAGACACTCCCGATGACTACCAAAGCTACAATGACTCCTCTGTCGCCTCAGACAATCTCCATTTCTTAGTCAACTGGCTCGCCCGATTCCCTGAACACGCTGGACGAAAAATCTACCTGGCCGGCGAGGGGTACGCTGGCAACTACATCCCCCAACTCGCCCAACTCATACTTAACCGCAATCATGCCAAGAAAAACTCCACCATCAATCTCAAATCAATCATTCTTCAAAATGCGGTGATCGACGCAGATGAGGACAGATGGGGATTCTTTGATAGCTTGTGGAGCCATGGGATGCTTTCTCAAAAGATGTATGATGATATAGAGAAGCATTGCTTCAAGAATTCATTGAGCGAAGAGTGTGTTTCTGTTTCCGAGGCCGCTGGCAAGAGTGTTCTTCCACTTTATCTGTTTGATCTCACAGCTTCAGTGTGCAATTTTAAGAACAGCACCGCACCAAGATATCCTGTGGATGAGTACTATGAATGTCAAGAAAAGGATGTCGCCGCTTATCTCAGATCGCCACAGGTTCAAAAGGCTTTGCATGTGAATCCAAAGAAAGTACCAAAGGAATGGGTTCAGTGCAATAGGGATGTGGCGAAGGGTTATATAGAGATCACCAACTCAACATTACCCATAGTCAAGAGCCTTCTCTCAAACAATGTTTCAGTCCTTGCATACAGTGGTGATGCCGATGCCTCTGTTCCGCCAATGTCGACGAGATTGTCAACAAGAAAGTTGAAGTTCTGGAAGTCTAACCCGTGGCATGTGTGGTATCCGACAAAAATTGATAATGGAGGGTTTGCTGAGGGGTACAGTGAAGGTGTAAGTTTTGCAACAGTGAGAGGGGCTGGCCATTTTGTTGCTAAGGCTAAAGGACCACAGCTGCAGTATTTAATAACTGTCTTCATGAATGGAACTCTGCCCAATGTAACATTCCCAATTGTTGATACGCCAGATGCACAGTTTAAATGATGGACTGACTGTTTTCTAATGGTTTGTTGAAAGAGAAGAAAAAATAATCAACCATAAGATACTTATGTTGTGTTATGAATGATGTGTGTGTGTATTTAATGCATTTGAAATCTTAGAAAATTAAGTGTTATTTCCCTCTTTTAGGAAGAGAGATTTTAATAATTTGCAAGCATTTACATGTAATAAAGCATCAAGGTTTATGCTGCATTAGCACGAATACAAAAATATAGATGCCTTACATAATGTCAATACATG

Network for GWHGAAEX003478

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00450.21	Peptidase_S10	71	476	2.70E-109

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0004185	Molecular Function	serine-type carboxypeptidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.040
SRP064423	SRR2545915	Juvenile tuber	0.100
SRP108465	SRR5643513	five period of Gastrodia elata	0.040
	SRR5643514	five period of Gastrodia elata	0.070
	SRR5643515	five period of Gastrodia elata	0.000
	SRR5643524	five period of Gastrodia elata	0.000
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.090
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.040
	SRR5643660	five period of Gastrodia elata	0.040
	SRR5643661	five period of Gastrodia elata	0.040
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.050
SRP279888	Gastro	Gastrodia elata tuber	0.04
	Juven	Juvenile tuber	0.00
	Mother_Gastro	Mother tuber of Gastrodia elata	0.06
	Mother_Juven	Mother tuber of Juvenile	0.05