Detail information of GWHGAAEX003482/evm.TU.scaffold_135.52


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG20580Ypt/Rab GTPase activating protein
nrgi|743787700|ref|XP_010922482.1|0PREDICTED: TBC1 domain family member 8B-like isoform X1 [Elaeis guineensis]
trEMBLtr|W9RFJ9|W9RFJ9_9ROSA0TBC1 domain family member 8B {ECO:0000313|EMBL:EXB88496.1}
TAIRAT3G550200Ypt/Rab-GAP domain of gyp1p superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013320188502071423-
Transcript Sequence

Network for GWHGAAEX003482

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00566.17RabGAP-TBC2244452.80E-50
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.370
SRR2545915Juvenile tuber19.070
SRP108465SRR5643513five period of Gastrodia elata13.250
SRR5643514five period of Gastrodia elata14.850
SRR5643515five period of Gastrodia elata14.520
SRR5643524five period of Gastrodia elata14.280
SRR5643525five period of Gastrodia elata17.320
SRR5643528five period of Gastrodia elata17.700
SRR5643658five period of Gastrodia elata21.500
SRR5643659five period of Gastrodia elata15.180
SRR5643660five period of Gastrodia elata14.630
SRR5643661five period of Gastrodia elata12.650
SRR5643662five period of Gastrodia elata14.310
SRR5643663five period of Gastrodia elata15.960
SRR5643664five period of Gastrodia elata15.820
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.980
SRR6049655Rhizomagastrodiae_C368-T10_good_116.820
SRR6049656Rhizomagastrodiae_C368-T07_good_118.690
SRR6049657Rhizomagastrodiae_C368-T07_good_124.700
SRR6049658Rhizomagastrodiae_C368-T04_good_116.710
SRR6049659Rhizomagastrodiae_C368-T04_good_119.480
SRR6049660Rhizomagastrodiae_C368-T01_good_119.350
SRR6049661Rhizomagastrodiae_C368-T04_good_116.140
SRR6049662Rhizomagastrodiae_C368-T01_good_116.450
SRR6049663Rhizomagastrodiae_C368-T01_good_115.830
SRR6049664Rhizomagastrodiae_C368-T10_good_116.260
SRR6049665Rhizomagastrodiae_C368-T10_good_116.260
SRP279888GastroGastrodia elata tuber 13.57
JuvenJuvenile tuber23.53
Mother_GastroMother tuber of Gastrodia elata 27.30
Mother_JuvenMother tuber of Juvenile 25.79