Detail information of GWHGAAEX003491/evm.TU.scaffold_135.63


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672114641|ref|XP_008777903.1|7.98E-49PREDICTED: two-component response regulator-like APRR1 [Phoenix dactylifera]
Swissprottr|Q9FHH8|COL5_ARATH2.00E-10Zinc finger protein CONSTANS-LIKE 5
trEMBLtr|M0STH2|M0STH2_MUSAM1.00E-43Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P30600_001}
TAIRAT1G638208.00E-26CCT motif family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013324401032441323-
Transcript Sequence

Network for GWHGAAEX003491

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06203.13CCT1081503.00E-19
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyOthers

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.540
SRR2545915Juvenile tuber0.580
SRP108465SRR5643513five period of Gastrodia elata7.910
SRR5643514five period of Gastrodia elata44.440
SRR5643515five period of Gastrodia elata6.750
SRR5643524five period of Gastrodia elata19.170
SRR5643525five period of Gastrodia elata4.510
SRR5643528five period of Gastrodia elata7.670
SRR5643658five period of Gastrodia elata6.120
SRR5643659five period of Gastrodia elata1.700
SRR5643660five period of Gastrodia elata0.390
SRR5643661five period of Gastrodia elata0.990
SRR5643662five period of Gastrodia elata1.870
SRR5643663five period of Gastrodia elata1.050
SRR5643664five period of Gastrodia elata1.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.490
SRR6049655Rhizomagastrodiae_C368-T10_good_18.240
SRR6049656Rhizomagastrodiae_C368-T07_good_17.700
SRR6049657Rhizomagastrodiae_C368-T07_good_16.180
SRR6049658Rhizomagastrodiae_C368-T04_good_16.620
SRR6049659Rhizomagastrodiae_C368-T04_good_18.820
SRR6049660Rhizomagastrodiae_C368-T01_good_118.290
SRR6049661Rhizomagastrodiae_C368-T04_good_16.490
SRR6049662Rhizomagastrodiae_C368-T01_good_134.200
SRR6049663Rhizomagastrodiae_C368-T01_good_144.190
SRR6049664Rhizomagastrodiae_C368-T10_good_18.310
SRR6049665Rhizomagastrodiae_C368-T10_good_18.310
SRP279888GastroGastrodia elata tuber 0.26
JuvenJuvenile tuber8.05
Mother_GastroMother tuber of Gastrodia elata 0.67
Mother_JuvenMother tuber of Juvenile 1.53