Detail information of GWHGAAEX003495/evm.TU.scaffold_135.73


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|189218303|ref|YP_001938945.1|7.00E-07RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
KOGKOG01071.00E-70Alternative splicing factor SRp20/9G8 (RRM superfamily)
nrgi|743884272|ref|XP_010909639.1|3.37E-118PREDICTED: serine/arginine-rich splicing factor RS2Z32-like [Elaeis guineensis]
Swissprottr|Q9FYB7|RSZ32_ARATH5.00E-85Serine/arginine-rich splicing factor RS2Z32
trEMBLtr|C5XPA0|C5XPA0_SORBI1.00E-104Putative uncharacterized protein Sb03g005500 {ECO:0000313|EMBL:EES00292.1}
TAIRAT3G535001.00E-70RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013326435742647934+
Transcript Sequence

Network for GWHGAAEX003495

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_113731.00E-14
PF00098.22zf-CCHC1031181.00E-05
PF00098.22zf-CCHC1241406.60E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12896SFRS7 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.430
SRR2545915Juvenile tuber11.920
SRP108465SRR5643513five period of Gastrodia elata12.060
SRR5643514five period of Gastrodia elata9.840
SRR5643515five period of Gastrodia elata9.150
SRR5643524five period of Gastrodia elata8.980
SRR5643525five period of Gastrodia elata7.110
SRR5643528five period of Gastrodia elata5.980
SRR5643658five period of Gastrodia elata6.270
SRR5643659five period of Gastrodia elata14.530
SRR5643660five period of Gastrodia elata19.620
SRR5643661five period of Gastrodia elata16.760
SRR5643662five period of Gastrodia elata13.530
SRR5643663five period of Gastrodia elata19.070
SRR5643664five period of Gastrodia elata18.480
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.820
SRR6049655Rhizomagastrodiae_C368-T10_good_113.720
SRR6049656Rhizomagastrodiae_C368-T07_good_113.450
SRR6049657Rhizomagastrodiae_C368-T07_good_114.600
SRR6049658Rhizomagastrodiae_C368-T04_good_113.540
SRR6049659Rhizomagastrodiae_C368-T04_good_110.870
SRR6049660Rhizomagastrodiae_C368-T01_good_115.480
SRR6049661Rhizomagastrodiae_C368-T04_good_113.130
SRR6049662Rhizomagastrodiae_C368-T01_good_112.420
SRR6049663Rhizomagastrodiae_C368-T01_good_114.010
SRR6049664Rhizomagastrodiae_C368-T10_good_110.400
SRR6049665Rhizomagastrodiae_C368-T10_good_110.400
SRP279888GastroGastrodia elata tuber 12.83
JuvenJuvenile tuber10.82
Mother_GastroMother tuber of Gastrodia elata 7.47
Mother_JuvenMother tuber of Juvenile 7.51