Detail information of GWHGAAEX003501/evm.TU.scaffold_136.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|386714222|ref|YP_006180545.1| | 4.00E-51 | MFS-type transporter [Halobacillus halophilus DSM 2266] |
| KOG | KOG0254 | 3.00E-155 | Predicted transporter (major facilitator superfamily) |
| nr | gi|514822855|ref|XP_004986088.1| | 0 | PREDICTED: hexose carrier protein HEX6-like [Setaria italica] |
| Swissprot | tr|Q07423|HEX6_RICCO | 1.00E-178 | Hexose carrier protein HEX6 |
| trEMBL | tr|K4A8L3|K4A8L3_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si035219m} |
| TAIR | AT1G11260 | 3.00E-155 | sugar transporter 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000128 | 171453 | 173922 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003501
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 28 | 493 | 9.30E-95 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 243.550 |
| SRR2545915 | Juvenile tuber | 5.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 36.800 |
| SRR5643514 | five period of Gastrodia elata | 7.350 | |
| SRR5643515 | five period of Gastrodia elata | 6.660 | |
| SRR5643524 | five period of Gastrodia elata | 3.350 | |
| SRR5643525 | five period of Gastrodia elata | 1.450 | |
| SRR5643528 | five period of Gastrodia elata | 0.370 | |
| SRR5643658 | five period of Gastrodia elata | 2.330 | |
| SRR5643659 | five period of Gastrodia elata | 4.060 | |
| SRR5643660 | five period of Gastrodia elata | 9.360 | |
| SRR5643661 | five period of Gastrodia elata | 4.530 | |
| SRR5643662 | five period of Gastrodia elata | 10.190 | |
| SRR5643663 | five period of Gastrodia elata | 3.200 | |
| SRR5643664 | five period of Gastrodia elata | 11.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 92.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 116.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 83.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 128.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 185.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 216.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 127.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 152.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 55.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 73.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 57.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 57.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.26 |
| Juven | Juvenile tuber | 39.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.05 | |
| Mother_Juven | Mother tuber of Juvenile | 3.02 |