Detail information of GWHGAAEX003503/evm.TU.scaffold_136.6
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284166917|ref|YP_003405196.1| | 5.00E-29 | sugar transporter [Haloterrigena turkmenica DSM 5511] |
| KOG | KOG0254 | 5.00E-60 | Predicted transporter (major facilitator superfamily) |
| nr | gi|566168408|ref|XP_006385129.1| | 6.17E-61 | hypothetical protein POPTR_0004s24170g [Populus trichocarpa] |
| Swissprot | tr|Q8L7R8|STP3_ARATH | 2.00E-60 | Sugar transport protein 3 |
| trEMBL | tr|U5GKN3|U5GKN3_POPTR | 2.00E-61 | Uncharacterized protein {ECO:0000313|EMBL:ERP62926.1} |
| TAIR | AT5G61520 | 5.00E-60 | Major facilitator superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000128 | 180236 | 181321 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003503
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 4 | 200 | 4.10E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 126.960 |
| SRR2545915 | Juvenile tuber | 2.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.570 |
| SRR5643514 | five period of Gastrodia elata | 3.530 | |
| SRR5643515 | five period of Gastrodia elata | 2.870 | |
| SRR5643524 | five period of Gastrodia elata | 2.240 | |
| SRR5643525 | five period of Gastrodia elata | 5.820 | |
| SRR5643528 | five period of Gastrodia elata | 2.200 | |
| SRR5643658 | five period of Gastrodia elata | 3.860 | |
| SRR5643659 | five period of Gastrodia elata | 1.620 | |
| SRR5643660 | five period of Gastrodia elata | 1.370 | |
| SRR5643661 | five period of Gastrodia elata | 1.970 | |
| SRR5643662 | five period of Gastrodia elata | 2.830 | |
| SRR5643663 | five period of Gastrodia elata | 1.050 | |
| SRR5643664 | five period of Gastrodia elata | 2.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 54.320 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.340 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 52.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 54.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 66.350 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 39.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 52.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.65 |
| Juven | Juvenile tuber | 29.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.42 | |
| Mother_Juven | Mother tuber of Juvenile | 4.64 |