Detail information of GWHGAAEX003508/evm.TU.scaffold_136.22


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|557694902|ref|YP_008797956.1|2.00E-12ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
KOGKOG04256.00E-96Ubiquitin-protein ligase
nrgi|743780856|ref|XP_010920634.1|5.03E-113PREDICTED: ubiquitin-conjugating enzyme E2 7-like [Elaeis guineensis]
Swissprottr|Q42540|UBC7_ARATH5.00E-97Ubiquitin-conjugating enzyme E2 7
trEMBLtr|K3XMK2|K3XMK2_SETIT7.00E-112Uncharacterized protein {ECO:0000313|EnsemblPlants:Si003125m}
TAIRAT3G464606.00E-96ubiquitin-conjugating enzyme 13

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012811425681183340+
Transcript Sequence

Network for GWHGAAEX003508

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.25UQ_con111602.90E-51
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10575UBE2G1, UBC7 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms160.200
SRR2545915Juvenile tuber187.330
SRP108465SRR5643513five period of Gastrodia elata137.920
SRR5643514five period of Gastrodia elata139.950
SRR5643515five period of Gastrodia elata128.880
SRR5643524five period of Gastrodia elata137.870
SRR5643525five period of Gastrodia elata133.350
SRR5643528five period of Gastrodia elata152.090
SRR5643658five period of Gastrodia elata108.070
SRR5643659five period of Gastrodia elata182.700
SRR5643660five period of Gastrodia elata187.900
SRR5643661five period of Gastrodia elata187.300
SRR5643662five period of Gastrodia elata169.460
SRR5643663five period of Gastrodia elata182.020
SRR5643664five period of Gastrodia elata193.270
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1150.670
SRR6049655Rhizomagastrodiae_C368-T10_good_1221.840
SRR6049656Rhizomagastrodiae_C368-T07_good_1135.960
SRR6049657Rhizomagastrodiae_C368-T07_good_1158.390
SRR6049658Rhizomagastrodiae_C368-T04_good_1143.860
SRR6049659Rhizomagastrodiae_C368-T04_good_1155.770
SRR6049660Rhizomagastrodiae_C368-T01_good_1141.470
SRR6049661Rhizomagastrodiae_C368-T04_good_1145.250
SRR6049662Rhizomagastrodiae_C368-T01_good_1120.720
SRR6049663Rhizomagastrodiae_C368-T01_good_1129.990
SRR6049664Rhizomagastrodiae_C368-T10_good_1145.570
SRR6049665Rhizomagastrodiae_C368-T10_good_1145.570
SRP279888GastroGastrodia elata tuber 224.95
JuvenJuvenile tuber219.14
Mother_GastroMother tuber of Gastrodia elata 118.85
Mother_JuvenMother tuber of Juvenile 179.97