Detail information of GWHGAAEX003509/evm.TU.scaffold_136.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392382305|ref|YP_005031502.1| | 3.00E-142 | N-carbamoylputrescine amidase [Azospirillum brasilense Sp245] |
| KOG | KOG0806 | 1.00E-137 | Carbon-nitrogen hydrolase |
| nr | gi|695035758|ref|XP_009405308.1| | 0 | PREDICTED: N-carbamoylputrescine amidase [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q3HVN1|AGUB_SOLTU | 0 | N-carbamoylputrescine amidase |
| trEMBL | tr|W1PSJ6|W1PSJ6_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN13007.1} |
| TAIR | AT2G27450 | 1.00E-137 | nitrilase-like protein 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000128 | 1488903 | 1536648 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003509
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00795.21 | CN_hydrolase | 9 | 271 | 7.30E-47 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12251 | aguB | Metabolic pathways | map01100 |
| Arginine and proline metabolism | map00330 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006807 | Biological Process | nitrogen compound metabolic process |
| GO:0006596 | Biological Process | polyamine biosynthetic process |
| GO:0050126 | Molecular Function | N-carbamoylputrescine amidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 48.600 |
| SRR2545915 | Juvenile tuber | 50.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 60.150 |
| SRR5643514 | five period of Gastrodia elata | 72.990 | |
| SRR5643515 | five period of Gastrodia elata | 63.550 | |
| SRR5643524 | five period of Gastrodia elata | 72.010 | |
| SRR5643525 | five period of Gastrodia elata | 70.160 | |
| SRR5643528 | five period of Gastrodia elata | 105.740 | |
| SRR5643658 | five period of Gastrodia elata | 74.430 | |
| SRR5643659 | five period of Gastrodia elata | 62.000 | |
| SRR5643660 | five period of Gastrodia elata | 63.560 | |
| SRR5643661 | five period of Gastrodia elata | 57.040 | |
| SRR5643662 | five period of Gastrodia elata | 51.410 | |
| SRR5643663 | five period of Gastrodia elata | 50.130 | |
| SRR5643664 | five period of Gastrodia elata | 50.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 50.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 72.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 57.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 46.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 49.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 42.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 45.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 46.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 65.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 57.720 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 80.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 80.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 63.36 |
| Juven | Juvenile tuber | 55.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 70.35 | |
| Mother_Juven | Mother tuber of Juvenile | 65.17 |