Gene detail

Detail information of GWHGAAEX003511/evm.TU.scaffold_136.28

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|427723549\|ref\|YP_007070826.1\|	2.00E-135	exoribonuclease II [Leptolyngbya sp. PCC 7376]
KOG	KOG2102	0	Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3
nr	gi\|743786973\|ref\|XP_010922307.1\|	0	PREDICTED: ribonuclease II, chloroplastic/mitochondrial isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q6NQJ6\|RNR1_ARATH	0	Ribonuclease II, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|M0RUZ0\|M0RUZ0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P24100_001}
TAIR	AT5G02250	0	Ribonuclease II/R family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000128	1705197	1756057	+

Transcript Sequence
>GWHTAAEX003511 GCAATCACTCATCAATCTCTCCCCTCATTCTCATGTACCAAGACATGACGATTAGGGCTGTGAGTAGATGCGCCATCGTTCGCTCGGCCTACCCTCCGATGTGCATTGCCTGCATCCCTTGCTGCCGTTGCTTTCGCACACGTCGTGTCTCACTGCCCTCAACCCTAAAGTTATCTCATCCCCAAGTGCCATGTTCTTTCCTTACCCTGTATTTCCATGGAGATCACTTTACATCTCATTCCCTCGGCCTTATTAGCTGCGTTTTGGAGGAGCTAAAAGCTACGCGCCCGATGAGACGAATCCGCGGGTTTAAGGACCTGGAATTGGTGAGCACTGCGGAGTTTGTCGGCCCTAAGAATCCGAAGAAGACACTCCAGGAAGGCTGTCTACTTGTATTTCAGAAAGATACACAGAAGCTGTTGCTTGCAGTTGCCCAAAAACCTGATGGAAAGAAGAACTGGATAGTTTGTGATCAGAACGGGGTTAATTCCTCCATAAAGCCTAAGCAAGTCACCTACATAATTGCTGTCTTCGAAAGCTTCGATCATAGAGATATTTCTGATTTTATTCAGAAAGCTCAGTGTCTCTTGGATCCAGCTATTTTGGTATGTGCTTGGGAGGAGCTTTTGGAAAATAAAAGATCTGTAACACCTGAAGAATTAGCAGAGATCATATATGGTAATAGAGAACCACTTGAAAGTTATTGCGCTTATATACTGCTATCACAAGATGATATTTATTTTAATCAACTCGAGTCCAAAGGATATTTACCTGTTTATGAACCGCGACCTACTGTACAGGTGGAAGAAAATGTTCATAGGAAGAAACTGAAAGAGTCATCAAACAAGGAAGTGGAAGCATTTGCCAAATTACTCGTGTCTGCAAGAGTTTTGCCTCATTACTCTAAACCTTCTAAATGCTCATGGTTGAATGATGAGAAGCTCAGGCGATGGATCACATCTCTTGAAGCTTATGCTTTTGATGCATGCAAAAATGATGAGCAGAAGAAAATTGCAGGAAATATTCTCAAGGGAATGGGATTATCGAAGACTTCATCTGCTGCAGTGAACCTTCTCATAGATATTGGCTACTTCCCTGTTCATGTTAATCTTGATCTTTTGAAGCTCAAAATCTCTACTGATGAAAGTGAGGAAGTAATATTTGCTGCTGAAGATCTTTTAACAACTAATGACGTTGATGAGGGTATCAGAAAAGATCTTACATCCTTGAAAGTATATGCAATTGATATTAATGAAGCTGATGAGCTTGATGATGCACTAAGCGCAATGAAACTACCAGATGGTAAAATTAATGTCTGGATACATGTTGCAGATCCTGCTTGTTTGGTTGAACCTCAAAGTATAATTGACAGGGATGCTATGCGTCGAGGAACCTCTATATACTTGCCCACTGCAACCTTTCCAATGTTCCCTGAAAAACTTGCCATGGAATGTATGAGTTTACGTCAAGGAAAACTTTGCAAGGCGGTCAGTGTGTCTGTAACTCTCCATCCTGATGGAAGTATTCTCGAGTACACAATATATAACTCCATTATAAGGCCAACCTATATGTTGACCTATCAGAGTGCTTCTGAGTTACTTCACTTGAACTTGGAAGAGGAGGCTGAACTAAGAATTTTATCTGAGGCAGCTTCTCTCCGTTTTAAATGGCGTTGCAGTCAGGGAGCAATAGACATGAACATGATTAAGCCACGTGTCAAAGTAGTCAATCCAGATGATCCTGAGCCCACAATCAATCTGTATGCTGAGGACCAATCAAACCCTGCAATGCGACTTGTTTCAGAATTGATGATACTCTGCGGAGAGGTTATAGCCACCTTTGGCTCTGTGCACAATATTCCATTACCTTACAGAGGGCATTCTCAGCCAAACATCTCAGCTTTTGCATTTGCCCATCTTCCAGAAGGACCAGTTAGGAGCTCGGCTTATGTTAGGATAATGCGCGCTGCTGAGATGGATTTTAAAAAGCCTATACCCCATGATGTTCTGGGTATTCCTGGTTACGTACAATTTACATCTCCAATTAGAAGATATGTTGATCTTCTAGCACACTATCAGATCAAGTCTTTTCTTAGGGGTGAATCCTTGCCATTTTCTTCTGGCGAGTTAGAGGGAATACAATGCCTTGTGAATATGCATGTCAAAAGTATAAAGAAGCTCGAAAGCAGAAGTTTAAGATACTGGTTGTTGGAATATTTTAGAAGACAGCCAAGGGAAATGAGATTTGGTGCCTTAATTCTTTGGTTCATTAAGGATCGGAATGCTTCTCTTCTTCTTGTTGAGGGAGACATCTGCTTAATTGGATGTGCTAAATTTCTAGAGTTAACATAATAGAGTTTGTAAGGGTTTAATAATCTGCCCAAGTGTAGAGAAAAGGCTTACGATTGTTGAGGCGGTGATATCAGAGAAAGAGGGGTTTTAAGTCATTGACACTGAGAAGATGCAGAATTACAATGGTGGAGCTTCTGGATGGGTGAGGATATCGATGGAGCTATTGGTTGAGGCTGTTGATGCAGATGGAGCTGATGTGTTGCAGGCAAAGCTCTGGATGTAGGTCACGGCTCTGGATGGGTTGTAGATAAAACTGACGATGATGTTGGCAAGTAATGAATGGGAACAGCTATGTAATTAAATCTGGTGGATCTACATTTTGCGATACCAATTTTGTTTAAAGAGAGGAGGCAGGTTGGAATTCAAGTAAATGCGCTTGTTTCGCTAGGGAAGCAAGTTGGTGATGAAATTGAGGTTGTTATTGAAGAGGTTCATCCCCGTGAAGATGTTCTTTCAGTTAGGGAAGTGTAAGAAGAAATAAGAGTGCAGATAGTCTCCAAAGTTCGGATATTCTTCAGGATCAGGGAATTTTATTCTTTCAGTAAGCCAGCAGTTGTTTACTAATATAACTTTAAAGCATACACATCTGCTTTACAAAATAAGTTATAATCATATTTAATTTTAAAGATGATAGTATAGTTTAATATATTTAAAGTTTTTTATATAAAGATGTTTTGTGCTGAAAACATGAAAACATAGAACAACTTATATCAAGATTGAGATTTTAGGTACTTAATGATATCTTGTTAACAAGATAGTGTAATTCTGTTAAGTTTGTGATGAACTCTTAAGCTCAATTTTTAGAAGATTTATTTTGTGCAATTACCTGAAATGCATTTCTA

Network for GWHGAAEX003511

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00773.18	RNB	393	688	6.60E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0004540	Molecular Function	ribonuclease activity
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.590
SRP064423	SRR2545915	Juvenile tuber	12.540
SRP108465	SRR5643513	five period of Gastrodia elata	6.080
	SRR5643514	five period of Gastrodia elata	7.620
	SRR5643515	five period of Gastrodia elata	7.190
	SRR5643524	five period of Gastrodia elata	6.650
	SRR5643525	five period of Gastrodia elata	13.090
	SRR5643528	five period of Gastrodia elata	10.710
	SRR5643658	five period of Gastrodia elata	14.170
	SRR5643659	five period of Gastrodia elata	7.230
	SRR5643660	five period of Gastrodia elata	7.120
	SRR5643661	five period of Gastrodia elata	6.490
	SRR5643662	five period of Gastrodia elata	6.250
	SRR5643663	five period of Gastrodia elata	9.260
	SRR5643664	five period of Gastrodia elata	7.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.730
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.160
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.340
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.340
SRP279888	Gastro	Gastrodia elata tuber	13.35
	Juven	Juvenile tuber	6.82
	Mother_Gastro	Mother tuber of Gastrodia elata	7.31
	Mother_Juven	Mother tuber of Juvenile	9.06