Detail information of GWHGAAEX003520/evm.TU.scaffold_137.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08007.00E-26FOG: Predicted E3 ubiquitin ligase
nrgi|743756995|ref|XP_010919719.1|1.49E-29PREDICTED: RING-H2 finger protein ATL40-like [Elaeis guineensis]
Swissprottr|Q9SLC4|ATL40_ARATH2.00E-26RING-H2 finger protein ATL40
trEMBLtr|K7M2K6|K7M2K6_SOYBN2.00E-28Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G36850.3}
TAIRAT2G423507.00E-26RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001342517733029-
Transcript Sequence

Network for GWHGAAEX003520

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_21091525.90E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.070
SRR2545915Juvenile tuber0.000
SRP108465SRR5643513five period of Gastrodia elata11.510
SRR5643514five period of Gastrodia elata41.590
SRR5643515five period of Gastrodia elata26.880
SRR5643524five period of Gastrodia elata27.240
SRR5643525five period of Gastrodia elata0.480
SRR5643528five period of Gastrodia elata0.280
SRR5643658five period of Gastrodia elata0.160
SRR5643659five period of Gastrodia elata0.230
SRR5643660five period of Gastrodia elata0.250
SRR5643661five period of Gastrodia elata0.380
SRR5643662five period of Gastrodia elata0.130
SRR5643663five period of Gastrodia elata0.190
SRR5643664five period of Gastrodia elata0.170
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.790
SRR6049655Rhizomagastrodiae_C368-T10_good_121.380
SRR6049656Rhizomagastrodiae_C368-T07_good_120.530
SRR6049657Rhizomagastrodiae_C368-T07_good_19.420
SRR6049658Rhizomagastrodiae_C368-T04_good_113.580
SRR6049659Rhizomagastrodiae_C368-T04_good_112.850
SRR6049660Rhizomagastrodiae_C368-T01_good_16.440
SRR6049661Rhizomagastrodiae_C368-T04_good_17.280
SRR6049662Rhizomagastrodiae_C368-T01_good_120.630
SRR6049663Rhizomagastrodiae_C368-T01_good_119.810
SRR6049664Rhizomagastrodiae_C368-T10_good_150.280
SRR6049665Rhizomagastrodiae_C368-T10_good_150.280
SRP279888GastroGastrodia elata tuber 0.15
JuvenJuvenile tuber0.05
Mother_GastroMother tuber of Gastrodia elata 1.66
Mother_JuvenMother tuber of Juvenile 2.04