Gene detail

Detail information of GWHGAAEX003523/evm.TU.scaffold_137.6

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695062596\|ref\|XP_009419773.1\|	0	PREDICTED: protein CHUP1, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LI74\|CHUP1_ARATH	3.00E-102	Protein CHUP1, chloroplastic
trEMBL	tr\|A0A0A0KHU8\|A0A0A0KHU8_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN49295.1}
TAIR	AT4G18570	2.00E-125	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000134	388127	401225	+

Transcript Sequence
>GWHTAAEX003523 CTCTCTTTATCCCACCCATCGTCCTCCTCATTTCAAACTTGGATCCAATAAAGACGACCGTTCCTCGACCCCCGAGCTCCTCCCGCTTTAGCCTCGCGCACCCCACCAATACCCCAAAAAAAAAAAAGAAAAAGGCGCCCACGGAAGCTCACTGACTTCACCGTAGAGATGCGATGGTCTCCGGAAAGGTGAAGAAGGCGGTGATGAGGTTTCAGAAGAGCCCAGCAACCCCCAAGCCCGAAGCGCCAAGGCGATCGTCTTCCTCCCTCAAAAGCCCCGTCCAGATTTCCAGCGGCAAAGCATCGTCAGTCTTCTCCCGCTCCTTCGGCGTCTATTTCCCTCGCTCCTCCGCGCAGGTGCAGCCCCGCCCCCCAGACATTTCCGATCTCCTCCGCCTAGTACAAGACCTCCAGGAAAAGGAGTTCTTCCTCAGAGCCGAGCACAAGATCCTCAACGAAACGCTAGCCGTGGTTCCCTTTATGGAGAAGGAGATCCGCGCGAAGAACGACGAGCTGGACCGCGTTCAGAAAGTTGCTGATGGATTGGAGTCCCAGAATCGGGTCCTGAGAGTGGAGGCTGAGGCCTTGCTCGCCAAGATTCGGGAGATTGAGGACGATCGGAGGAAGAGGGATGCGGAGATCGAAGGGCTGAAGCGGACTCTTTCCGATCAGCAGAGCCAGCTGAGCGTTCGATCCTGCGCCAGATGCGCAGCGGCCATGGACGACTGCTCGTCCAAGTTTCAGGGCCTGATAGACGCTTCCGCCAGATCCGTACTGCTCAAGAATATCCGCAGATCATCCGTACCAGCTGGCATTGCGCTGAATCCAGACGATTCGAAGCATGGCGCCAAGGATCGGAAGGATGAGTCCTCGGAACCCCCCCGCCCTGCTAGGGTTCCGAGACCCCCTCCCTTGCCTTCTGCTCTGTCGCAGAGCTCAAGCTGTTGCAAGAATCAGGCTGCTCTGCCGGCGATCCCGCCGCCGCCACCTCCACCGCCGGCGACGGCAGCAGTAAAAGGCGCGAGATCGGAGATGGCCTCTGTGAGAAGAGTGCCTGAGGTGGTGGAGTTTTACCACTCGATGATGAGAAGGGACGTGAAGAGGGACTCCGCCGGAGGAGCCGGCGATACGTCGTCGGCGGCAAACGCCCGGAGCATGATCGGAGAGATTGAGAACCGGTCGGCTCACCTGCTCGCTATCAAGACGGACGTGGAAACGCAGGGCGATTTCATAAGGTGTTTGATAAAGCAAGTGCAGAACGCAGCGTTCTCAAACATTGAGGATCTCGTTGCCTTCGTCAAATGGCTCGACAATGAGCTGTCTTTCCTGGTGGACGAGAGGGCAGTTTTGAAGCATTTCGAATGGCCAGAGGCTAAGTCAGATGCCATGCGGGAAGCGGCGTTTGGGTACCGCGATCTTCGGAAGCTGGAAGCTGAGGCTTCGTCCTTCTGCGATGATCCACGGCAGCCCTGTGCTTCTGCAATTAAGAAGATGCAGAGCCTTCTTGAAAAATTAGAACATGGGATATATAGTCTTTCTCGCGTGCGGGAAGGTGCGATAGAACGATACAAGAATTTCCAAATCCCTTGGGACTGGATGCTTGATTCTGCCGTAGCTAGCCTGATCAAGCATGCATCGGTTAAGCTAGCTATGAAGTACATGAAAAGAGTGACATCTGAGATTTCTGCCGCATCGGGTGGTGGCCCTGAAGAAGAGGAGCTCATGCTTCAAGGGGTTAGGTTTGCCTTTCGAGTGCATCAGTTTGCCGGAGGTTTTGATGTGGAAACAATGCGTGCTTTTCAAGAGCTCAAAAATAAAGCCAGAAAACGTCAAGCTGATAAGCAAAATCAACAGCAGCAGCAAAAGCTCTTCAGCAGATCTGCTCCCAACGCCCTCACTCCCTGCTGAAACATCTATTGCAAATCAACAGCAGCAGCAAAAGCTCCTTTTAGCAAATCAACTCTCGCTCTTCTCCTAAATAGGCTGGCACAACTTCTTGCTTGAGCAAGTAAGACTGAGAACAAGAAGCCATTCTTTTTATTTATTTTCTTACTTTTGATCTGTTGTAAAGAATTGCTAGACTTCCCTATTTTTCATGGAGAGCCACTTGATCTATTTATTGAAGTAGATCCAACTTGCATGAATGAACTCTCATTTTTAACTTGAGTGCCAACAGTTAGCGACTTCATGAGCAGCAACAGATGAGTTGCTTTTGAATCTAAAACATCACATTTTCTTCTCCTTTATTTTATTTAAATTGATTAATGCTTTCTAAGCTCCCGATGAGATGAATCCCGCACTCAACCTGCTTCTCCTGGTTTGGCGGATCTGGCGAGGTCGGCTCACTCAAACAAAAGGCTGCTTGAGTAAGGACTTCATTGAATGAACAATGTGAATGCAACACGGTGTTCAGTTCAGATCTCTGCGGCTGTCGAGGCTCACTTTCTTGAATGTCTTAAAATTCATTTAAGCATGTAAATAGTTAAAGTTTATATAGTTATGTAAAATTTGTGAGACATGTACCCATCAAAATACATTGTGCAATGTTCAATATGTATAGATGCTTTTTATTGCTAGGATAGCATCCCTAGATTACCATGCACCTAAGATGCAATTCAATAAATAAAGGAA

Network for GWHGAAEX003523

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.830
SRP064423	SRR2545915	Juvenile tuber	1.980
SRP108465	SRR5643513	five period of Gastrodia elata	7.530
	SRR5643514	five period of Gastrodia elata	11.290
	SRR5643515	five period of Gastrodia elata	4.750
	SRR5643524	five period of Gastrodia elata	7.740
	SRR5643525	five period of Gastrodia elata	2.550
	SRR5643528	five period of Gastrodia elata	2.230
	SRR5643658	five period of Gastrodia elata	2.360
	SRR5643659	five period of Gastrodia elata	1.810
	SRR5643660	five period of Gastrodia elata	1.290
	SRR5643661	five period of Gastrodia elata	1.000
	SRR5643662	five period of Gastrodia elata	0.900
	SRR5643663	five period of Gastrodia elata	0.540
	SRR5643664	five period of Gastrodia elata	0.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.730
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.220
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.930
SRP279888	Gastro	Gastrodia elata tuber	1.13
	Juven	Juvenile tuber	10.44
	Mother_Gastro	Mother tuber of Gastrodia elata	4.78
	Mother_Juven	Mother tuber of Juvenile	7.67