Detail information of GWHGAAEX003525/evm.TU.scaffold_137.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672121212|ref|XP_008783898.1|1.58E-87PREDICTED: transcription factor bHLH30-like [Phoenix dactylifera]
Swissprottr|Q9LET0|BH107_ARATH4.00E-36Putative transcription factor bHLH107
trEMBLtr|M0SBG9|M0SBG9_MUSAM4.00E-64Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P03510_001}
TAIRAT3G567701.00E-35basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000134512564515808+
Transcript Sequence

Network for GWHGAAEX003525

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.25HLH661121.60E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983Molecular Functionprotein dimerization activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.480
SRR2545915Juvenile tuber28.150
SRP108465SRR5643513five period of Gastrodia elata22.750
SRR5643514five period of Gastrodia elata16.580
SRR5643515five period of Gastrodia elata9.780
SRR5643524five period of Gastrodia elata16.540
SRR5643525five period of Gastrodia elata14.310
SRR5643528five period of Gastrodia elata11.830
SRR5643658five period of Gastrodia elata11.990
SRR5643659five period of Gastrodia elata18.660
SRR5643660five period of Gastrodia elata20.530
SRR5643661five period of Gastrodia elata17.270
SRR5643662five period of Gastrodia elata19.270
SRR5643663five period of Gastrodia elata21.180
SRR5643664five period of Gastrodia elata16.850
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.080
SRR6049655Rhizomagastrodiae_C368-T10_good_128.600
SRR6049656Rhizomagastrodiae_C368-T07_good_118.760
SRR6049657Rhizomagastrodiae_C368-T07_good_120.270
SRR6049658Rhizomagastrodiae_C368-T04_good_118.850
SRR6049659Rhizomagastrodiae_C368-T04_good_116.390
SRR6049660Rhizomagastrodiae_C368-T01_good_111.730
SRR6049661Rhizomagastrodiae_C368-T04_good_123.240
SRR6049662Rhizomagastrodiae_C368-T01_good_111.310
SRR6049663Rhizomagastrodiae_C368-T01_good_110.040
SRR6049664Rhizomagastrodiae_C368-T10_good_117.580
SRR6049665Rhizomagastrodiae_C368-T10_good_117.580
SRP279888GastroGastrodia elata tuber 27.45
JuvenJuvenile tuber49.76
Mother_GastroMother tuber of Gastrodia elata 11.25
Mother_JuvenMother tuber of Juvenile 22.60