Detail information of GWHGAAEX003528/evm.TU.scaffold_137.26
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 2.00E-35 | two component regulator [Flavobacterium johnsoniae UW101] |
| nr | gi|743848188|ref|XP_010939295.1| | 0 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250 [Elaeis guineensis] |
| Swissprot | tr|C0LGK4|Y2165_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (Precursor) |
| trEMBL | tr|B9RBF5|B9RBF5_RICCO | 0 | Lrr receptor protein kinase, putative {ECO:0000313|EMBL:EEF50876.1} |
| TAIR | AT2G16250 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000134 | 1580551 | 1585136 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003528
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 26 | 61 | 0.00052 |
| PF13855.5 | LRR_8 | 242 | 302 | 3.80E-08 |
| PF07714.16 | Pkinase_Tyr | 513 | 783 | 1.40E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XIV |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.630 |
| SRR2545915 | Juvenile tuber | 3.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.390 |
| SRR5643514 | five period of Gastrodia elata | 4.780 | |
| SRR5643515 | five period of Gastrodia elata | 3.030 | |
| SRR5643524 | five period of Gastrodia elata | 5.380 | |
| SRR5643525 | five period of Gastrodia elata | 2.660 | |
| SRR5643528 | five period of Gastrodia elata | 3.810 | |
| SRR5643658 | five period of Gastrodia elata | 2.360 | |
| SRR5643659 | five period of Gastrodia elata | 0.820 | |
| SRR5643660 | five period of Gastrodia elata | 0.770 | |
| SRR5643661 | five period of Gastrodia elata | 1.340 | |
| SRR5643662 | five period of Gastrodia elata | 0.710 | |
| SRR5643663 | five period of Gastrodia elata | 1.060 | |
| SRR5643664 | five period of Gastrodia elata | 0.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.720 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.03 |
| Juven | Juvenile tuber | 1.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.84 | |
| Mother_Juven | Mother tuber of Juvenile | 1.64 |