Gene detail

Detail information of GWHGAAEX003536/evm.TU.scaffold_137.44

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|332981568\|ref\|YP_004463009.1\|	9.00E-25	serine/threonine protein kinase with PASTA sensor(s) [Mahella australiensis 50-1 BON]
KOG	KOG1187	1.00E-166	Serine/threonine protein kinase
nr	gi\|743848123\|ref\|XP_010939278.1\|	0	PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Elaeis guineensis]
Swissprot	tr\|Q6NKZ9\|Y4345_ARATH	1.00E-171	Probable receptor-like serine/threonine-protein kinase At4g34500
trEMBL	tr\|A0A067LG41\|A0A067LG41_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP46248.1}
TAIR	AT4G34500	1.00E-166	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000134	2277494	2316666	+

Transcript Sequence
>GWHTAAEX003536 ATGGGCGGCATTCTGAAGGAAAAAACTTTAGTGCTAGGGCTCCGTCTCCACGTCCTCCTCCTCGCAATAGCAGTGGTAGCTCTCCTGACCGGCTGTCTGACCGCGCTCTTCCTGCTCCTCCGATCTAGCAGCCGACGCCATAGACGGACCCGATTAAAGCGCTCGCCGACCTTCTTGACGGAAACGGACGAGATCGGGTTGGATCGGAAGGGGGCCGAGGCGGGAGAATCGTCTAGTTCAAAATCGGGGGCTGCTTTTGTAGGGCATATAGGATGGGGGAGATGGTACACCATGGCGGAACTTGAAATGGCCACCACCGGATTCAGCCAGTGGAATGTCATCGGCGAGGGAGGCTATGGCGTCGTCTACCGGGGAGTTCTTCCCGATCTCTCCCTCGTCGCCGTCAAGAATCTGTCAAATAAAAAAGGTCAAGCAGAGAAAGAATTTAAAGTGGAGGTGGAAGCCATTGGACGAGTGAGGCACAAGAATCTCGTGGGCCTGTTGGGCTATTGCGCAGAAGGCCCTAAAAGGATGCTAGTCTACGAGTATATGGATAATGGGAATCTGGAACAGTGGCTGCATGGGGATGTTGGCCCTGTTAGCCCATTGGCATGGGAAGTCAGAATGAAGATTGCCATAGGCACAGCAAAAGGATTAGCACATTTGCATGAAGGGCTGGAGCCCAAAGTAGTGCACCGAGATATCAAGTCCAGCAACATTCTTCTAGATAAGCAGTGGAACCCCAAAGTCTCAGATTTTGGGCTTGCAAAGCTCCTCGGCCCCGGCTCCAACTTTGTGACCACCCGAGTGATGGGAACTTTCGGGTATGTGGCTCCTGAGTATGCATCCACTGGCCTGCTTAATGAGAGCAGCGACGTGTATAGTTTTGGCGTTCTGCTTATGGAAATAATATCCGGAAGGAGCCCTATTGACTACAGGAGATCCGCCGGAGAGCTGTTGCAGGTGAATTTGGTGGAGTGGTTTAGAGGGAAGGTTGCGAGTAAGCAGGTGGAACAAGTGCTGGACCCATCATTGGAGATGCAACCGTCTCCGAGAGCTCTGAAGAGGACTCTGCTTGTCTGCCTTCGCTGTGTTGATTTGGATGCCTTCAAACGGCCAAAGATGAGCCAAATAGCTCACATGCTCGAAACCGACGAGTTCCCCTTCCGCCTGGAGCATAGATCGCCTAGGGAAGTGTCTCTGCGGACCTGTCTTCCGGCATCCGTTTCCCCTGCTCGATTCCCGCTTCAAGATGACACCAAGCCAGCCTCCGCCGACCCTTTAGAAAAACCTCTGTTGCGCGATAGCACCTTTCCCTCTGTGGATGTGGCGTTGTGGCATGATAGAGCGGCTGGCTTTCTGGAATCCAGGCACTGTGGCGCGCTGTACCATCTTTTTCTCTGGGATTCAGGCACTATGGCGTGCCATGACGCCTTGCTCTCGGGAAGTTGGCCCCCCATCGTCCCGATGGGGAAGCGCTACAGTGCCGGGCAGGTCACCCGACCCGCGCCGCAGTGCAGCGGCTCGCGCACATGGGCGCTCTGCGTGCATGCAGGAGCCGCCCGTTGGCATGTGATTGATGGCGTGCGAGGTGGAGATCATGCCTTGCTCTTGCCAGTGTCGCAAGCGTCGTATGCTACGGCTTCCCTCCCATGGTATTTAGGCTATTTCTGGCTCGAGGCTTCTTCCCATTTCACTCCTTATCTCATTTCCCCTCTGTCACGAGCTCAGGAAGGCTTAGTCGCATTACTGTCAATGGATCAACATCTTGACCAAACCCTAATCCCAGGGCGCGGTCCGGGTCGACCCGACCTGCCCCATGCAGGCTCGATCCATGCCGTCCTTCTGCAGGTCTCGGGTTCGTGTGCATATGAACTACGGGCCACGGAGCGTAGCTTGACCCGCGTGCAGCCCGTAAATATGACACTTTCAGCTGTGGAGTCTGAACAGTAA

Network for GWHGAAEX003536

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	110	379	1.00E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.650
SRP064423	SRR2545915	Juvenile tuber	8.100
SRP108465	SRR5643513	five period of Gastrodia elata	9.180
	SRR5643514	five period of Gastrodia elata	9.240
	SRR5643515	five period of Gastrodia elata	6.830
	SRR5643524	five period of Gastrodia elata	11.460
	SRR5643525	five period of Gastrodia elata	2.950
	SRR5643528	five period of Gastrodia elata	2.240
	SRR5643658	five period of Gastrodia elata	5.100
	SRR5643659	five period of Gastrodia elata	0.930
	SRR5643660	five period of Gastrodia elata	0.650
	SRR5643661	five period of Gastrodia elata	1.360
	SRR5643662	five period of Gastrodia elata	1.080
	SRR5643663	five period of Gastrodia elata	1.190
	SRR5643664	five period of Gastrodia elata	1.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.620
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.470
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.690
SRP279888	Gastro	Gastrodia elata tuber	1.24
	Juven	Juvenile tuber	0.73
	Mother_Gastro	Mother tuber of Gastrodia elata	1.07
	Mother_Juven	Mother tuber of Juvenile	0.98