Detail information of GWHGAAEX003538/evm.TU.scaffold_137.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|292491433|ref|YP_003526872.1| | 2.00E-145 | NAD-dependent epimerase/dehydratase [Nitrosococcus halophilus Nc 4] |
| KOG | KOG1431 | 0 | GDP-L-fucose synthetase |
| nr | gi|743864473|ref|XP_010904592.1| | 0 | PREDICTED: probable GDP-L-fucose synthase 1 [Elaeis guineensis] |
| Swissprot | tr|Q67WR2|FCL1_ORYSJ | 0 | Probable GDP-L-fucose synthase 1 |
| trEMBL | tr|K7WBC6|K7WBC6_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G029856_P01} |
| TAIR | AT1G17890 | 0 | NAD(P)-binding Rossmann-fold superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000134 | 2487782 | 2489716 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003538
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01370.20 | Epimerase | 18 | 250 | 6.30E-68 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02377 | TSTA3, fcl | Metabolic pathways | map01100 |
| Fructose and mannose metabolism | map00051 | ||
| Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009226 | Biological Process | nucleotide-sugar biosynthetic process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0050662 | Molecular Function | coenzyme binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.030 |
| SRR2545915 | Juvenile tuber | 31.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 41.290 |
| SRR5643514 | five period of Gastrodia elata | 34.930 | |
| SRR5643515 | five period of Gastrodia elata | 36.710 | |
| SRR5643524 | five period of Gastrodia elata | 36.840 | |
| SRR5643525 | five period of Gastrodia elata | 27.280 | |
| SRR5643528 | five period of Gastrodia elata | 20.700 | |
| SRR5643658 | five period of Gastrodia elata | 13.730 | |
| SRR5643659 | five period of Gastrodia elata | 42.030 | |
| SRR5643660 | five period of Gastrodia elata | 35.160 | |
| SRR5643661 | five period of Gastrodia elata | 44.820 | |
| SRR5643662 | five period of Gastrodia elata | 44.640 | |
| SRR5643663 | five period of Gastrodia elata | 38.180 | |
| SRR5643664 | five period of Gastrodia elata | 24.820 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 37.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 33.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 40.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 33.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 46.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 42.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 49.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 49.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.23 |
| Juven | Juvenile tuber | 22.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.89 | |
| Mother_Juven | Mother tuber of Juvenile | 22.84 |