Detail information of GWHGAAEX003542/evm.TU.scaffold_138.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428320532|ref|YP_007118414.1| | 3.00E-61 | DNA polymerase III, subunits gamma and tau [Oscillatoria nigro-viridis PCC 7112] |
| KOG | KOG0989 | 0 | Replication factor C, subunit RFC4 |
| nr | gi|672177705|ref|XP_008808954.1| | 0 | PREDICTED: protein STICHEL-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|O64728|STI_ARATH | 0 | Protein STICHEL |
| trEMBL | tr|K3XDY5|K3XDY5_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si000102m} |
| TAIR | AT2G02480 | 0 | AAA-type ATPase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000143 | 27091 | 81766 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003542
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13177.5 | DNA_pol3_delta2 | 430 | 587 | 4.60E-27 |
| PF12169.7 | DNA_pol3_gamma3 | 644 | 765 | 7.10E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006260 | Biological Process | DNA replication |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003887 | Molecular Function | DNA-directed DNA polymerase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0009360 | Cellular Component | DNA polymerase III complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.530 |
| SRR2545915 | Juvenile tuber | 11.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.810 |
| SRR5643514 | five period of Gastrodia elata | 5.370 | |
| SRR5643515 | five period of Gastrodia elata | 5.110 | |
| SRR5643524 | five period of Gastrodia elata | 4.900 | |
| SRR5643525 | five period of Gastrodia elata | 2.500 | |
| SRR5643528 | five period of Gastrodia elata | 3.500 | |
| SRR5643658 | five period of Gastrodia elata | 4.730 | |
| SRR5643659 | five period of Gastrodia elata | 7.020 | |
| SRR5643660 | five period of Gastrodia elata | 8.360 | |
| SRR5643661 | five period of Gastrodia elata | 4.800 | |
| SRR5643662 | five period of Gastrodia elata | 6.210 | |
| SRR5643663 | five period of Gastrodia elata | 7.440 | |
| SRR5643664 | five period of Gastrodia elata | 7.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.260 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.260 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.82 |
| Juven | Juvenile tuber | 10.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.73 | |
| Mother_Juven | Mother tuber of Juvenile | 6.14 |