Detail information of GWHGAAEX003543/evm.TU.scaffold_138.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|113478270|ref|YP_724331.1| | 4.00E-37 | cyclic nucleotide-binding protein [Trichodesmium erythraeum IMS101] |
| KOG | KOG0498 | 0 | K+-channel ERG and related proteins, contain PAS/PAC sensor domain |
| nr | gi|743815499|ref|XP_010930357.1| | 0 | PREDICTED: potassium channel KOR2-like [Elaeis guineensis] |
| Swissprot | tr|Q7XUW4|KOR2_ORYSJ | 0 | Potassium channel KOR2 |
| trEMBL | tr|W1NWX5|W1NWX5_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERM99785.1} |
| TAIR | AT3G02850 | 0 | STELAR K+ outward rectifier |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000143 | 75814 | 83631 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003543
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00520.30 | Ion_trans | 11 | 218 | 8.30E-19 |
| PF00027.28 | cNMP_binding | 313 | 397 | 6.90E-17 |
| PF12796.6 | Ank_2 | 445 | 535 | 5.00E-14 |
| PF00023.29 | Ank | 569 | 599 | 0.01 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0006811 | Biological Process | ion transport |
| GO:0006813 | Biological Process | potassium ion transport |
| GO:0005216 | Molecular Function | ion channel activity |
| GO:0005249 | Molecular Function | voltage-gated potassium channel activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.160 |
| SRR2545915 | Juvenile tuber | 0.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.210 |
| SRR5643514 | five period of Gastrodia elata | 0.650 | |
| SRR5643515 | five period of Gastrodia elata | 0.540 | |
| SRR5643524 | five period of Gastrodia elata | 0.520 | |
| SRR5643525 | five period of Gastrodia elata | 0.680 | |
| SRR5643528 | five period of Gastrodia elata | 0.340 | |
| SRR5643658 | five period of Gastrodia elata | 0.850 | |
| SRR5643659 | five period of Gastrodia elata | 0.380 | |
| SRR5643660 | five period of Gastrodia elata | 0.150 | |
| SRR5643661 | five period of Gastrodia elata | 0.150 | |
| SRR5643662 | five period of Gastrodia elata | 0.370 | |
| SRR5643663 | five period of Gastrodia elata | 0.280 | |
| SRR5643664 | five period of Gastrodia elata | 0.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.640 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.170 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.13 |
| Juven | Juvenile tuber | 0.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.09 | |
| Mother_Juven | Mother tuber of Juvenile | 0.04 |