Gene detail

Detail information of GWHGAAEX003546/evm.TU.scaffold_138.10

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743765002\|ref\|XP_010912718.1\|	3.05E-114	PREDICTED: zinc-finger homeodomain protein 4-like [Elaeis guineensis]
Swissprot	tr\|Q9M9S0\|ZHD4_ARATH	1.00E-77	Zinc-finger homeodomain protein 4
trEMBL	tr\|M0SF84\|M0SF84_MUSAM	1.00E-90	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P16680_001}
TAIR	AT1G14440	4.00E-77	homeobox protein 31

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000143	273911	275537	+

Transcript Sequence
>GWHTAAEX003546 TCTCTCTCTCTCTTTCTCTCTCTTCACTTAAACTTGCTTGAGAGTAGAGAGGGGAAAGATTTGATGGGGTTTTAATGTTGTTTCCCTTTCTTGTAATAGTAGAAACTGAAGCAGGCATTTTAAGTATCAATGCCTTGTTAGCCACTGCTCCTGCTGCAGCGCCGATGCTGATTTATCTTTACTTCCTTGGTGAAAAAATTCGTTCTTCGTCTCTTGGTTGAACCTCCGAAAGCAGAGGCCAAAAGCTGTTCTTTTGCAAGCATCTGGAATCATTAGTCATCCTTCCGTCCAAAAATACAAAGGGAAAATCGAGCCAGAGTCTTCATTTTTGTTAGTCTTTCCTGTCCTCCACTTTGGTCTTTGCTTAAAGCACAAAGGTAGAGAAGGGGAGGATGAATATTTCGGGGCATGAAGAAGAGATGCCAATCCCAATAAGTAGCACTTATGTTGGTGGAGGAGGACAGAGTCACAGTCACTCCTCTCTATTCATCCATCATGAATCCCCTCCTCTTCATCAGCTAAAGCTTCACGCGTCCAATGGCACTTCTCAAGAGCCACCTCCTCCTCTTCCTCAAGCTCCAACTCCACTAAGCATCAAGAAAAAACCTTGTGTCAAGTACAGAGAATGCCTCAAGAACCATGCGGCCTCCATTGGTGGGAATGCCACAGATGGCTGTGGAGAGTTCATGCCTTGCGGAGAAGAGGGAAGTCTTGAAGCCCTCAAATGCTCGGCTTGCAATTGCCACAGAAACTTCCACAGGAAAGAGATCCAAGGGGGGGCTTGTTCTATGGAACTCTTCCACTTCAAAGGAGGGAGGAAGGCAATGAGTCCAAAGGGAGTTCTTGTGTCATCAGGGGCCGACCCCTTTGGGTACAATCTTCAACGCTCTTCTTCTGCTCACCAAATGATAATGCCATTTGGGGCAATGCAGACCTCTGAGTCCGATGAGATGGAGGGAGGATTTGGTGGGTCCATGCCAAGGATGCCTCCTCTGATGAAGAAGAGGTTCAGAACCAAGTTCACTTCAGAGCAGAAGGAAAAGATGCTGAGCTTTGCTGAGAAGGTTGATTGGAGGCTGCAGAAGCATGAGGAAGCTGTTGTGCAGCAGTTCTGCCAGGAGATTGGAGTTAAGAGGAAAGTTCTCAAGGTGTGGATGCACAATAACAAGCATAATTTCGCAAAGAAGAGCACCAGTCTACAGCTGGACTGATCCTTTGATTTTTGTCTCACTGACCTTTAGGATTAATGCTTTGGTGAGTTCTTTGGATGTTATTTTTTTTGTGCCTCACCTATTTGTTACCATTGGTTTGCTGATCTAAGTTTATGGAGTTTGGTAGGATCTGAAGCTCTTTTTTTGTTTTTTCTTTTAATATTTCTTTCTACAAGTACTCCTTTAGTAGGGAAATGGAGATTGGGTTGTCTTTTGGCTTCCATGCTTTGGATGGACAGCGGTCCTTGAACTGATTTCTTTTATTAATTATTTCTTCAGCTTTGCTTTGCTAAGTGCTTGTGTTCTTTAATGTAGCATCAATACTATTTACAAATGTAGCAAATAGTAATTGACATTTAAGATCTGTTATCCCATGTCTTCAATTGTCATGATTTTTAAATGTATTCTCATTTAGG

Network for GWHGAAEX003546

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04770.11	ZF-HD_dimer	74	126	1.40E-27

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	zf-HD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.060
SRP064423	SRR2545915	Juvenile tuber	1.950
SRP108465	SRR5643513	five period of Gastrodia elata	2.090
	SRR5643514	five period of Gastrodia elata	1.380
	SRR5643515	five period of Gastrodia elata	0.460
	SRR5643524	five period of Gastrodia elata	1.200
	SRR5643525	five period of Gastrodia elata	0.670
	SRR5643528	five period of Gastrodia elata	0.400
	SRR5643658	five period of Gastrodia elata	1.100
	SRR5643659	five period of Gastrodia elata	0.770
	SRR5643660	five period of Gastrodia elata	0.400
	SRR5643661	five period of Gastrodia elata	0.360
	SRR5643662	five period of Gastrodia elata	0.180
	SRR5643663	five period of Gastrodia elata	0.100
	SRR5643664	five period of Gastrodia elata	0.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.200
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.740
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.200
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.830
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.530
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.020
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.570
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.570
SRP279888	Gastro	Gastrodia elata tuber	0.17
	Juven	Juvenile tuber	0.69
	Mother_Gastro	Mother tuber of Gastrodia elata	0.19
	Mother_Juven	Mother tuber of Juvenile	0.52