Detail information of GWHGAAEX003548/evm.TU.scaffold_138.14
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|260892393|ref|YP_003238490.1| | 1.00E-136 | ATP-dependent protease ATP-binding subunit ClpX [Ammonifex degensii KC4] |
| KOG | KOG0745 | 0 | Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) |
| nr | gi|743815553|ref|XP_010930370.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Elaeis guineensis] |
| trEMBL | tr|J3LDY4|J3LDY4_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB02G28510.1} |
| TAIR | AT5G53350 | 0 | CLP protease regulatory subunit X |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000143 | 512999 | 593552 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003548
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07724.13 | AAA_2 | 241 | 445 | 5.50E-43 |
| PF10431.8 | ClpB_D2-small | 452 | 523 | 2.10E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03544 | clpX, CLPX | Cell cycle - Caulobacter | map04112 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006457 | Biological Process | protein folding |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0051082 | Molecular Function | unfolded protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.260 |
| SRR2545915 | Juvenile tuber | 16.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.140 |
| SRR5643514 | five period of Gastrodia elata | 22.130 | |
| SRR5643515 | five period of Gastrodia elata | 17.230 | |
| SRR5643524 | five period of Gastrodia elata | 20.850 | |
| SRR5643525 | five period of Gastrodia elata | 17.030 | |
| SRR5643528 | five period of Gastrodia elata | 16.820 | |
| SRR5643658 | five period of Gastrodia elata | 18.000 | |
| SRR5643659 | five period of Gastrodia elata | 14.730 | |
| SRR5643660 | five period of Gastrodia elata | 14.600 | |
| SRR5643661 | five period of Gastrodia elata | 12.080 | |
| SRR5643662 | five period of Gastrodia elata | 12.380 | |
| SRR5643663 | five period of Gastrodia elata | 13.970 | |
| SRR5643664 | five period of Gastrodia elata | 14.780 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.530 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.720 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.77 |
| Juven | Juvenile tuber | 20.92 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.19 | |
| Mother_Juven | Mother tuber of Juvenile | 23.17 |