Gene detail

Detail information of GWHGAAEX003559/evm.TU.scaffold_138.31

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|390952858\|ref\|YP_006416616.1\|	1.00E-24	serine/threonine protein kinase [Aequorivita sublithincola DSM 14238]
KOG	KOG0600	0	Cdc2-related protein kinase
nr	gi\|672142899\|ref\|XP_008795313.1\|	0	PREDICTED: probable serine/threonine-protein kinase At1g54610 [Phoenix dactylifera]
Swissprot	tr\|F4I114\|Y1960_ARATH	0	Probable serine/threonine-protein kinase At1g09600
trEMBL	tr\|M0T7U4\|M0T7U4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P17460_001}
TAIR	AT1G53050	0	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000143	1016054	1022054	-

Transcript Sequence
>GWHTAAEX003559 CCTTTCTGCCTTTCCAATGCCAGAAACAGATATTGGGGAGAGGGTGTGCGGTAAAGGTGAGGAGAGGAATAGATGAAGAAGAAAGAATGCCTGTAGATTCATAGGAAAACTGCTGATAGATCAGAAGAGCTTCGGAACCCTATCTCCGTCCCTTGGGATTTGAATCTTATACCGACGATTCCAGCCAGATTTCTTAACGAAAATATCTTTTTGATAAAAAAGGAGGCGATTTGTTTGTTTATGTAGATCTTAAGCCGGGAAACCGCCTTAGGTCCGTCTCCAAATTTGAAGCTTTTGAAGAAATATCATCTCGCCATTAGGGTTTAGAACATTTCGTTTATTCTTCATCTGCAGCCTGGTATAAACGGTGGAAAAAAGGGGGAACTTTCTAGTTCTTCTTTATGGGCTGCATTTGTTCTAAAGGAATTCAAGCAGAGGAAACTGTTGAGGAATTGAGAAAGGGAACAAGAAAACCCTTAAATCGGCTTGTTACTCCTTCGAAGAAGAAAGATGCTGTTTCATCTAGAAGCATTGGAGCATTCTCTTTGGATGGAAGTGGAATGCCTCTTGTGCGCCAGAGAAGCAGAACTGTTGATGTCAGAGCAAATGGGAAAGATCCCCAATTGAAGATTTTGGGTGGGGTGGGAAATGGCCGTTCAAACTCTGGGATTTATGATGTGCCAAATGGTTTTTCAGGTGAATGTGTGGCTGCGGGTTGGCCTGTTTGGCTCACAAATGTTGCACCAGAAGCAGTGAATGGTTGGCTTCCTCGAAGAGCAGATTCATTTGAGAAATTAAATAAGATTGGACAAGGAACTTACAGCAATGTGTATAAAGCGCGTGATCTTCAAACCAAAAAAATCGTTGCTCTCAAGAAAGTTCGTTTTGTCAATATGGATCCCGAAAGTGTTCGTTTCATGGCAAGAGAAATTCTTATTTTGCGTAAACTTAACCACCCTAATGTTATAAAGCTAGAAGGAATAGTTACATCAAGAATGTCAAGTAATCTGTATCTTGTATTTGAATATATGGATCATGACCTTGCTGGGCTTGCTGCAACGCCCAGCATCAAGTTCACTGAGCCGCAGATTAAATGCTTCATGCAACAACTACTTTGTGGACTTGAACACTGCCATCGTCATGGAGTCTTGCATAGAGATATTAAGGGATCTAACCTTCTGATTGGAAATGATGGCATCCTTCGAATAGCAGACTTTGGCCTGGCAACATTTTTCAACCCTGACCAGAAGCAATCCTTAACAAGCCGTGTTGTGACTCTATGGTACCGGCCTCCTGAGCTCTTGTTGGGTGCCACTGAATATGGTGTTGCCGTTGATTTATGGAGTAGTGGCTGCATCCTTGCTGAATTGATTGCTGGAAAGCCTATCATGCCAGGAAGAACTGAGGTAGAACAATTGCATAAAATTTTCAAGCTCTGCGGGTCTCCTCCAGAGGAGTACTGGAGAAAACCGAAGTTACCCCATGCAACGATTTTCAAACCTCAGCATCCATACCCTCGTCGAATAGGAGAGACATTCAAGGATTGCCCTTCTTCAACTTTGTTTCTTTTGGATACTCTTCTTGCGATTCAGCCAGAGGACCGAGGAACAGCGACTTCCGCTCTTCGAAGTGAATTTTTCACAACGAAGCCTTTCCCCTGTGATCCTTCAAGCTTGCCTAAATATCCACCAAGCAAGGAGTATGATGTCAGACTTCGAGATGAGGAAGCTAGAAGGCGAAGGGATGCAGCTCGTAATGATAAAGCATCAGAGCCTGCAAAGAGTGGTACAGCATGCCACAAACCTATGCCAGGGCTAGATGCCAATGGGGACCTTCAGAGATGGCAGGGACAACCAAATCCCAAGAGTGCAAGCGATAAGTATAGTCTTGTAGAAGCTGGTTCAGGGTTTCCCATTGATTCTCCCAGAGTAGCCCAAAATGGCTTATCAAACTCTAATTCAGCAATGCACCCAAGCACATTTGGCTCCTCTTGGGTTAAGAAGAATGATATGAGAACGATTAAACGCACTTCCAGCACTGTTAGGGTGCCCAATGGTGAACAGTTGATATCACAAAATTCTTATGTTCCACCGAGTAGTGGTATGGAGTTTGCCAATACAAGGAGTAGTATGAGTTCCCGGCACAGTAAACTTGATGCTGCTGAGCCAAATGAGAAGCTGCGTGTGCTCAATAGAACCTCCTCTACTCAAAAGAGGGATGCAATGGCTGGAGGCCGGAACACCTTAATGGGTTATGGTGGGAAAAACAGAAGAATTCAATATTCAGGACCATTGATGCCTTCAGGTGGGAATATGGAAGAGTTGCTGAAAGAGCATGAGAGACAAATTCAGCAAGCTGTACGGAAGGCTCGTCTCGATACGGTCAAGTCCAAGAAACATTGGTAATATGAGGTGCCTTTCTGAAGATTTTCTTTGCTCCCTTGGCTTGAACTGTAGCATGGGAGAAAATGGAGGGTATAAGGTCAAGACCAAGTATTTGCTGTATATGCCCCTTCTGAAGGCTTTTTTTGCATGAAATGGAGTTCAGTACTTAAAGAAGCTCATCTAAACCAATGTAAATGCTCTTTTTGAATAAAATTTATTAGAATATGGCCTTTCCATTGTGCCATAAATTCTTTTTTCCTTGATATTTTTCAGAGATTATACACATTTTATTTGTGAAATTTTTATTGTAAAATATAGTATTGGTTAATAGAAATAAGTTTCTTTCTTCATTGAAAGTTTAAGCTTCCTTGTTGTAACACTAATAGTTCT

Network for GWHGAAEX003559

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	129	413	1.40E-67

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CRK7-CDK9

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.250
SRP064423	SRR2545915	Juvenile tuber	3.360
SRP108465	SRR5643513	five period of Gastrodia elata	3.480
	SRR5643514	five period of Gastrodia elata	3.620
	SRR5643515	five period of Gastrodia elata	3.860
	SRR5643524	five period of Gastrodia elata	3.950
	SRR5643525	five period of Gastrodia elata	5.770
	SRR5643528	five period of Gastrodia elata	6.550
	SRR5643658	five period of Gastrodia elata	6.700
	SRR5643659	five period of Gastrodia elata	5.040
	SRR5643660	five period of Gastrodia elata	4.690
	SRR5643661	five period of Gastrodia elata	5.260
	SRR5643662	five period of Gastrodia elata	5.380
	SRR5643663	five period of Gastrodia elata	6.120
	SRR5643664	five period of Gastrodia elata	5.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.010
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.850
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.770
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.510
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.080
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.080
SRP279888	Gastro	Gastrodia elata tuber	5.12
	Juven	Juvenile tuber	3.19
	Mother_Gastro	Mother tuber of Gastrodia elata	3.25
	Mother_Juven	Mother tuber of Juvenile	1.47