Detail information of GWHGAAEX003560/evm.TU.scaffold_138.33
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|476416784|ref|YP_007546702.1| | 4.00E-90 | serine O-acetyltransferase [Glaciecola psychrophila 170] |
| KOG | KOG4750 | 4.00E-160 | Serine O-acetyltransferase |
| nr | gi|695054159|ref|XP_009415201.1| | 1.07E-174 | PREDICTED: probable serine acetyltransferase 1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q42538|SAT5_ARATH | 1.00E-160 | Serine acetyltransferase 5 |
| trEMBL | tr|Q9SDP2|Q9SDP2_ALLCE | 5.00E-174 | Serine acetyltransferase {ECO:0000313|EMBL:AAF19000.1} |
| TAIR | AT5G56760 | 4.00E-160 | serine acetyltransferase 1;1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000143 | 1113988 | 1115286 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003560
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06426.13 | SATase_N | 52 | 156 | 1.00E-35 |
| PF00132.23 | Hexapep | 236 | 269 | 1.20E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006535 | Biological Process | cysteine biosynthetic process from serine |
| GO:0009001 | Molecular Function | serine O-acetyltransferase activity |
| GO:0016740 | Molecular Function | transferase activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.290 |
| SRR2545915 | Juvenile tuber | 8.840 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.110 |
| SRR5643514 | five period of Gastrodia elata | 21.690 | |
| SRR5643515 | five period of Gastrodia elata | 29.280 | |
| SRR5643524 | five period of Gastrodia elata | 22.780 | |
| SRR5643525 | five period of Gastrodia elata | 33.700 | |
| SRR5643528 | five period of Gastrodia elata | 46.760 | |
| SRR5643658 | five period of Gastrodia elata | 29.080 | |
| SRR5643659 | five period of Gastrodia elata | 29.330 | |
| SRR5643660 | five period of Gastrodia elata | 28.780 | |
| SRR5643661 | five period of Gastrodia elata | 30.710 | |
| SRR5643662 | five period of Gastrodia elata | 28.040 | |
| SRR5643663 | five period of Gastrodia elata | 24.950 | |
| SRR5643664 | five period of Gastrodia elata | 21.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.510 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.35 |
| Juven | Juvenile tuber | 12.69 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.38 | |
| Mother_Juven | Mother tuber of Juvenile | 22.27 |