Gene detail

Detail information of GWHGAAEX003561/evm.TU.scaffold_138.39

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|410661797\|ref\|YP_006914168.1\|	1.00E-20	Serine/threonine protein kinase PrkC, regulator of stationary phase [Dehalobacter sp. CF]
KOG	KOG1187	0	Serine/threonine protein kinase
nr	gi\|695037378\|ref\|XP_009406179.1\|	0	PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9CAL8\|PEK13_ARATH	3.00E-97	Proline-rich receptor-like protein kinase PERK13
trEMBL	tr\|F6HY31\|F6HY31_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59354.1}
TAIR	AT3G13690	0	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000143	1261322	1277277	+

Transcript Sequence
>GWHTAAEX003561 TCAAACCCTTGTTGCAGAAACGACAAAACGCTAGGGGTATTTTAGGCATGCGGGGAATTCAGAGAGCCAGAGGTCTTTATTTTCGGGATGCCGCCGGTGAACTGTCGCACTGGCAATTCGCAAGTCATTTTTAATTGTTATATTGATGGCGGGTAATCCTCCTCTGTGAGGATTAGGGTTAGGGTTTTTTTTTCAGGTTTTCCTCCTCGAGATCTTTATAGCTCGTTGTATCCAATATTGAACGATTGAGTTCGGTGGGCGGTGGTTCTCCATCGCTGCACGTTTGGCAGTGCTGGTTCTTCTTCTTAACTACTGAACTGTGTAGAGATTACTGCAACAGCATGAAGAAAGGAACAAGTATGAGTTGTTGAAGGATTTTTGGGGAAGTTTTCATTAGCTTTCCGTTGACATAGGGAAACAACTAAACTCTTGCGAGCTTGGTGTTTGGAGGCAAACTATTAGGGGATCACGGGATCGGCTTTGTTTGTCCGAGTGCTAAGCGAAGATAGTGATTTATCTGCAAAATGTTGATTAGGCCGCCTGGGATCTACCTTTTTTCTTGTGTCGTTATCTCTTAAAGAATAGTACATTCACGGAAATGGTGATTCCCAACGCCTTTTATAATTTCTGTTGCATTTGATGATTCTCGCTACGTTGGGGACGACGCTTCGGCAACTTTGAGAGCCCTTTTTAAAAGGTCTCAAGAGTATCGACATTAGAGAGACGGAGTAGTTGGACCCTTTCGAAAAAGCCAACAAAGAATAGCTTTTAAGGATTCAGTCTGTGTCTTTCGAGTGTCACTCAGAAATTATTGATATAAAATTATTTCCAGGTGAAGGGGAAAGGTAGACATAAGAGGATAAAGGAAGTGTATTTTTTTTTCTCTACCCCGATTTTAAACGTTCCACGTCAAAAGTGGGTTTTGCCCTCAACTTTTTCTTCTTCGGCGAGATAGGAACTGTTGCTCCTGTATGCGTATATTTGGCATTTGGTGAAATTGGCCATTTATTTTTGGAGGAAAGTTTTGTTTTCAGGCCGGAGGTTTGATTTTAGACGGTGGAGGGAATGAGTACCGGAATGCAGCATAGGAGAGGAAGGACCGCCGATAATGGTGTGAATTTAACAGAGAAGGTTGTAGTGGCTGTTAAGGCTTCTAAAGAAATATCGAAGCATGCGCTGGTTTGGGCCTTAACTCATGTTGTTCAGCCTGGCGATTGCTTAACGCTTTTGGTTGTTATGCCGCAGCATAGTTCAGGTAGGAAACTTTGGGGTTTTCCTAGACTTGCTGGGGACTGTGCTAGTGGTCACAGGGGGTCCCAAACTGGAACTACTTTAGAGCAGAAATCTGATCTTACTTATCTATGTTCTCAAATGATGCTTCAACTCCATGATGTTTATGACCCAAACAAGATTAATGTCAAAGTAAAGGTTGTATCTGGTTCACCATCTGGTGTTGTAGCGGCTGAATCCAAGAGGGCTAATGCCAGCTGGGTAATTTTGGACAAGCAGCTAAAACATGAGGAGAAGCACTGCATAGAGGATCTGCAATCAAACATAGTTGTCATGAAGCGTTCTCAGCCTAAAGTTCTTAGATTGAATATTGTAAGATCCCCTGAGGCTCAGAATTCTGAGCTTTGTTCATCTCCTCCTGGGTTGTATTTGTCATCTGAAGAGGTTAAGAAGGATATCAAGGGTCTTCAAACATGCATTCAAGGTCCAACAGTTACTCCCTCAAGCAGCCCTGAAGTGGACACATCGTTTACTGCCACTGAAGCAGGAACCTCCTCAGTATCTAGTTCGGATCCTGGAACTTCTCCCTTCTTTGTATCTGAAACAAATAGGTTCCTTAAGAAGACCGAAAAGACCGAATTGAAGCAAAATCAAAATTTGAATGTAACCAGCTCTGATTCTGATGGTGAAAGTATGAGTCCTTCGACAACACTTGCGTTACAGCCATGGATGGTTGGGATTCTCTCTAGTGGGCAAATATCCTCTCAGAACATTGAAGGCATTTCTCATAAACTTAAAGATTCTCGCATTTCCAAAGCCAAAATTTTGTTGGAGAGGTATTCTATGCCTAATAGGAAAGCTGGGATAAATACTATGAACCTTAGGTCCGAGTGGAGCGCTGGCAGCAATGTGAAAGAAACTATACCTTTAACTAGAAATCCAACACAAATTCCTCCTCCTTTATGTTCAATATGTCAGCACAAAACACCTGTGTTTGGTAAACCTCCGAGGTGGTTCACTTACTCCGAGCTAGAACTTGCTACTGGTAGTTTTTCTCAGGCCAACTTTTTGGCAGAGGGTGGGTTTGGATCTGTTCATAGAGGACTTTTACCTGATGGACAGGCAATTGCTGTAAAGCAACATAAACTTGCTAGTTCGCAGGGTGACCATGAGTTCTGCGCTGAGGTTGAAGTTCTAAGCTGTGCACAGCACCGCAATGTTATTATGCTGATTGGGTTTTGTGTTGAGGATAGAAGAAGGCTACTAGTTTATGAGTATATTTGCAACGGTTCATTAGACTCCCATCTCTATGGCCGTAACCAGGAACCGCTAGAATGGCCCGCTAGGCAAAAGATCGCAGTTGGCTCAGCACGAGGATTGAGGTACCTTCATGAAGAGTGTAGGGTGGGCTGCATAGTGCACCGTGACATGAGACCAAATAACATCCTCATAACCCATGACTTTGAACCACTGGTTGGTGATTTTGGCCTTGCTAGATTGCAACCTAATGGTGATCTTGGTGTAGAAACCAGAGTAATTGGCACATTTGGGTATCTTGCACCGGAGTATGCACAAAGCGGACAAATCACAGAGAAAGCAGATGTATATTCTTTTGGAGTTGTGCTAGTTGAGCTTGTGACGGGACGCAAAGCTGTGGACATCAACAGGCCAAAGGGAGAGCAATGCCTAACTGAATGGGCTCGTCCACTTTTGGAGGAATATGCAATTCATGAATTGTTGGATCCATGTTTGGCTAATCACTACTCCGAACATGAAGTGTACTGCATGTTGCATGCGGCATCTTTGTGTATTCAACGAGATCCCCAAGCAAGGCCTAAAATGTCTCAGGTTTTGCGGATTCTGGAGGGCGATTTGGTGATCGAATCCAATTACATATCAACCCCAGGCAGCGATGTCGGCAGCCAGAGCGGGAGACTGTGGTCAGAGCAGCTGCCAGGTCGCAACAGCCAGAGGTCTCATCACAGTCGTTCCAGCAGCTTCAGTGGGGAGCCCTCTTATGACCTGTCAAGACCTTGTTGGGGGAGGGAGAGAGAAGAGAAGGCAACACGTTTTCTCAAGAGATAATATAGCATTCAAAGATGCACCTTTTTTTTAGCCAATGTTCTGCTCATTGTTTGTGTAAATTTGTTTTTGTATAGTGATAGTGTAAGCATGTGAACTGCATCCAAGGTTCCTCTGTTACACAGGCTGTCAATTAATCATATTTCAATATTCTTGAAAATTCTGCAGATTCTCTGTTAGCTATCCTCCGCACACCCACATACATACACCTACATACAGACACATACATAAAAAATGTTGAACTTTTAACAATTGCATTTCTTGTACCATGTGATATAGCAAAAGATGTTGGGCAATGGTTTGCTTAAATGAGCCCGGCAATATTTGTTTAGTGATGGTTATAAAATTTATT

Network for GWHGAAEX003561

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.16	Pkinase_Tyr	410	675	1.10E-40

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.030
SRP064423	SRR2545915	Juvenile tuber	11.250
SRP108465	SRR5643513	five period of Gastrodia elata	15.360
	SRR5643514	five period of Gastrodia elata	12.580
	SRR5643515	five period of Gastrodia elata	10.570
	SRR5643524	five period of Gastrodia elata	13.260
	SRR5643525	five period of Gastrodia elata	5.900
	SRR5643528	five period of Gastrodia elata	7.770
	SRR5643658	five period of Gastrodia elata	14.590
	SRR5643659	five period of Gastrodia elata	4.610
	SRR5643660	five period of Gastrodia elata	6.320
	SRR5643661	five period of Gastrodia elata	5.210
	SRR5643662	five period of Gastrodia elata	5.970
	SRR5643663	five period of Gastrodia elata	2.980
	SRR5643664	five period of Gastrodia elata	4.710
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.920
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.990
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.100
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.430
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.490
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.360
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.360
SRP279888	Gastro	Gastrodia elata tuber	6.10
	Juven	Juvenile tuber	23.25
	Mother_Gastro	Mother tuber of Gastrodia elata	10.66
	Mother_Juven	Mother tuber of Juvenile	11.13