Detail information of GWHGAAEX003562/evm.TU.scaffold_138.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220914187|ref|YP_002489496.1| | 9.00E-17 | cellulose synthase [Arthrobacter chlorophenolicus A6] |
| nr | gi|672137229|ref|XP_008792332.1| | 0 | PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] [Phoenix dactylifera] |
| Swissprot | tr|Q5JN63|CESA4_ORYSJ | 0 | Cellulose synthase A catalytic subunit 4 [UDP-forming] |
| trEMBL | tr|A0A067JEC8|A0A067JEC8_JATCU | 0 | Cellulose synthase {ECO:0000256|RuleBase:RU361116} |
| TAIR | AT4G18780 | 0 | cellulose synthase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000143 | 1278748 | 1288684 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003562
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03552.13 | Cellulose_synt | 167 | 876 | 0 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030244 | Biological Process | cellulose biosynthetic process |
| GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.360 |
| SRR2545915 | Juvenile tuber | 5.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.570 |
| SRR5643514 | five period of Gastrodia elata | 4.320 | |
| SRR5643515 | five period of Gastrodia elata | 4.300 | |
| SRR5643524 | five period of Gastrodia elata | 4.320 | |
| SRR5643525 | five period of Gastrodia elata | 88.070 | |
| SRR5643528 | five period of Gastrodia elata | 63.480 | |
| SRR5643658 | five period of Gastrodia elata | 201.910 | |
| SRR5643659 | five period of Gastrodia elata | 5.830 | |
| SRR5643660 | five period of Gastrodia elata | 7.370 | |
| SRR5643661 | five period of Gastrodia elata | 7.440 | |
| SRR5643662 | five period of Gastrodia elata | 5.950 | |
| SRR5643663 | five period of Gastrodia elata | 7.400 | |
| SRR5643664 | five period of Gastrodia elata | 6.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.86 |
| Juven | Juvenile tuber | 5.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.84 | |
| Mother_Juven | Mother tuber of Juvenile | 9.01 |