Detail information of GWHGAAEX003565/evm.TU.scaffold_138.44


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34483.00E-58Predicted snRNP core protein
nrgi|743882883|ref|XP_010909268.1|1.20E-60PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Elaeis guineensis]
Swissprottr|Q1H595|LSM2_ARATH9.00E-59Sm-like protein LSM2 {ECO:0000305}
trEMBLtr|M0RS51|M0RS51_MUSAM1.00E-59Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P14210_001}
TAIRAT1G033303.00E-58Small nuclear ribonucleoprotein family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014313185931320139-
Transcript Sequence

Network for GWHGAAEX003565

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01423.21LSM7711.00E-16
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12621LSM2 Spliceosome map03040
RNA degradationmap03018

Gene Ontology

GO term OntologyName
GO:0006397Biological ProcessmRNA processing

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms70.900
SRR2545915Juvenile tuber70.490
SRP108465SRR5643513five period of Gastrodia elata121.570
SRR5643514five period of Gastrodia elata138.660
SRR5643515five period of Gastrodia elata114.450
SRR5643524five period of Gastrodia elata125.650
SRR5643525five period of Gastrodia elata135.710
SRR5643528five period of Gastrodia elata132.340
SRR5643658five period of Gastrodia elata128.310
SRR5643659five period of Gastrodia elata92.160
SRR5643660five period of Gastrodia elata77.300
SRR5643661five period of Gastrodia elata83.300
SRR5643662five period of Gastrodia elata87.120
SRR5643663five period of Gastrodia elata97.070
SRR5643664five period of Gastrodia elata71.010
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_179.550
SRR6049655Rhizomagastrodiae_C368-T10_good_149.980
SRR6049656Rhizomagastrodiae_C368-T07_good_185.880
SRR6049657Rhizomagastrodiae_C368-T07_good_172.380
SRR6049658Rhizomagastrodiae_C368-T04_good_168.990
SRR6049659Rhizomagastrodiae_C368-T04_good_156.430
SRR6049660Rhizomagastrodiae_C368-T01_good_169.920
SRR6049661Rhizomagastrodiae_C368-T04_good_172.600
SRR6049662Rhizomagastrodiae_C368-T01_good_1108.680
SRR6049663Rhizomagastrodiae_C368-T01_good_187.190
SRR6049664Rhizomagastrodiae_C368-T10_good_1125.500
SRR6049665Rhizomagastrodiae_C368-T10_good_1125.500
SRP279888GastroGastrodia elata tuber 73.25
JuvenJuvenile tuber85.66
Mother_GastroMother tuber of Gastrodia elata 97.60
Mother_JuvenMother tuber of Juvenile 99.77