Detail information of GWHGAAEX003576/evm.TU.scaffold_138.58
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 9.00E-167 | FOG: PPR repeat |
| nr | gi|672156373|ref|XP_008797883.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Phoenix dactylifera] |
| Swissprot | tr|Q9FJY7|PP449_ARATH | 3.00E-167 | Pentatricopeptide repeat-containing protein At5g66520 |
| trEMBL | tr|B9HDP6|B9HDP6_POPTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:EEE92095.2} |
| TAIR | AT5G66520 | 9.00E-167 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000143 | 1861619 | 1863508 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003576
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 162 | 186 | 1.3 |
| PF01535.19 | PPR | 191 | 219 | 7.90E-09 |
| PF01535.19 | PPR | 222 | 248 | 2.50E-06 |
| PF13041.5 | PPR_2 | 321 | 369 | 1.30E-09 |
| PF01535.19 | PPR | 396 | 420 | 0.029 |
| PF14432.5 | DYW_deaminase | 496 | 619 | 8.50E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.630 |
| SRR2545915 | Juvenile tuber | 2.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.290 |
| SRR5643514 | five period of Gastrodia elata | 5.510 | |
| SRR5643515 | five period of Gastrodia elata | 3.210 | |
| SRR5643524 | five period of Gastrodia elata | 3.870 | |
| SRR5643525 | five period of Gastrodia elata | 2.620 | |
| SRR5643528 | five period of Gastrodia elata | 1.520 | |
| SRR5643658 | five period of Gastrodia elata | 1.660 | |
| SRR5643659 | five period of Gastrodia elata | 5.640 | |
| SRR5643660 | five period of Gastrodia elata | 6.840 | |
| SRR5643661 | five period of Gastrodia elata | 6.440 | |
| SRR5643662 | five period of Gastrodia elata | 7.460 | |
| SRR5643663 | five period of Gastrodia elata | 5.730 | |
| SRR5643664 | five period of Gastrodia elata | 5.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.120 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.87 |
| Juven | Juvenile tuber | 5.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.65 | |
| Mother_Juven | Mother tuber of Juvenile | 1.75 |