Gene detail

Detail information of GWHGAAEX003578/evm.TU.scaffold_138.60

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1974	DNA topoisomerase I-interacting protein
nr	gi\|695081110\|ref\|XP_009388052.1\|	PREDICTED: protein timeless homolog [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0UBL0\|M0UBL0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP23020_001}
TAIR	AT5G52910	timeless family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000143	1868646	1917623	-

Transcript Sequence
>GWHTAAEX003578 GTTTTTCCAGGATTCTTCCATCTATCAAGAGAACTGCAGTCCTGTAAACCCTAATTCGAGCTCCGGTGGGAAGAGAAATGAATACAGAAGGTCTTTGCATGATATGCACTGGCTTCGGAATTGCAGACGAGGATGAGAATGGGAACGTGAGGGGTTACACGAAGACAGAATACTGTTTAGATAATCTGAAGGATTTACAGAGATTTCTGCGGAGGGATGATCCTCAACGGAGGGATGTTTTCAAGCAGATCTGCAAATGGAATACAGTCTCCCGCGATATTGTTCCAATTATCGAACATTACCAGAGCGATGGGATTTTGGTAACAAACTCAGTGAAGATTTTGGTGTTCCTAACGATGCCGGTGGATCCTGATTCCGCGGAAGTGGCACAGCAGATCGAGTACTTGTGGGAATTGAAAGCTGTACTAACCCGCAATGTCACGATAGCTGTAATAGTTACTCTCCTGGAGGAGCCATTGGGCCATCTGGAAAGTGGTGCGTTCACAGAAGATGACTGGAAGCTAGTGCAGCTTGTGCTTACATTGTTTCGCAATATCCTTGCCATCCAAAGCATTACAATCCAGCAAAAGGCCTCTGGATCTGCTACTGAGCTTTTTTATTTGACTGAGAGGTTTTTGGAACTCATGTTCCAGGAGAATGTCATGGACTTGATTTTAGTTCTGGCACAGCATATTGATGATCCTGATGGCTATGTTCGACAAGATAATTTACTTTTACTAGAGATATTTCATCATATTCTGCTTGGAAAAGATCCTGAATTGATTGCTAAAACTTTTTCCGTTAACCATAAGACTAGTACAGGCAGTGCATCTTCGGATCCTCTCAGGTCATTAATAGAGGCGGAAGATGAGAAGAGGAGAGCATTTAAACAAAGGAAGTTTGAATGCCGTTCAAAGCTGAGCGGAACATTTACTCGATTTTCCATGGATGGGTCAAAAATGCTATTAAAAAATCCTGCATCTGCTTTTGCAAATGGCTTAGCAAAAGCTCGCAAAGTTCAACGAGGTTCGCTGAAAAAAATTGCTTATGACAATGATTCCTTGGCTCCACAAGAGGAAAATATTCTAGAACTACTTCACAATTTCTTAAATCAGTTCTTAGCTGGTGGCTACAATGACTTTATGCAGACAATCCGTGATGATATTATAAAAGAACAGCTGGACATACAGAAGAGTGACATTATATCATTTTTTCAGGCCACCCATTTTATTACAGCATTCCACCAGAAAAAAATTTTAACAAAGGGACAGAATATGGAGAATATGGAACATGAATCATCTGTTGATAGTCAACCAGCAGATTATCTTTCATTGCATCAGGATTTGTGTGGCCCAATTGCAGCGACTATGAATGAAGCAATGTACTCGTTAGTCATGTCAAAGTGGCGTGAAGTTTCAGATGGAATAAAGATAACCAATGATTACAAGTTCCTTACTGCAGCCGGATCTCTTCTGAAAAGCATGGTCCGCATGTTAGATCTGGTGCTGAAATTGCAACCTGAAGATTCAAAAGAATGTCAAACTGCTCGTGTAATGTTGTATAAATTATTTTATGATCAAACTGATGAGGGATTGACGCAGTTTCTTCTGAATCGGTTTAAATGCTTTGATTCTCATAAGCAACCTAAAAGTGATCTCGCAGATCTGCTGGAGATCATACATATCATGTTACGGCTTATGGAGAAACTTCAAGCTCATGGTACACTAAGGGTTTCTAAAAAAACTAGAAAAAGGACAGTGAGAAACAAGGCTTCAAAGGACAAAATTGAAGTAGAATCGGAGCTTACAAAAGAACCAGAAATTGCCAATGAGCATGCAGAATCTCCCTCGACAACCTATACAGACCCTGCAAAGTCAGTCAATGAGAAGCTTTCAAAATTAAGTTCTGTTGAAAAGGATCAAGCATTTAACGAATGTTCTTTGAACCCTACAAGCCCAGGTGCATTCAGCAATCCTCTGCTGAATACAGAATTATGCCATGACCATTTATCTGCTGCACAGGATGATGAAGAAAACATGAAGTCTGCTGATCAAGAATATGAAACAGGCAGCTCTTCAAACACTGAGGAGCCTGCAACCAATGAAGTGAATTTTAATATTTCTGCATTGGTTTCTAGTTTTGCAAGCAACACTGTCATCCATAATTTATGCTGGTTACTGAGGCATTATACAGTCAACTCTGCTAGCACTAATCACTATATCTTATGCATGCTTAGGCGGTTTTGTGAGGATTTGGAGCTCTCTCCCATGCTCTATCAGCTGTCGCTATTGACTATATTTTATGAAATATTAGCTGAGCTAAAGACATGTAAATCCAAGAAGTACATGGACATCATAAATTTTCTAACCAAATTTCTTAGAAAGATGTTTAAGACAATGAAAAAACAGCCCTTGCTTTTTGTTGAAATACTCTTTTGGAAGACACGTAGAGAATGCCAGTTTATCAATGCTGAAATTCTGGTGGAAAGTATTGGCAACCTGAGAAAAGGTGTAAGAAATTTAGAAGATGACCAGACTGGTGCTTTTAACCATCACAGAAATATGGGCTATAGAAGCATAGCTGATGCTCTTGGCGAAGATGAGATTGACTTAGATCTTTCTCAAATGCGCCATGACCGAAGGGTGGAACAATTGTCTAATAGGGCAACACAAAGTCAAGTTGAAAATAGCAACATTTCTTATTCTTCAGAAAATGAGACAGGCAATGAAAGAAGTGAAAATCCATCCAGTTTACAGGCCAATGAAACTACAAGATGGAATAATAATCTTAAATTTACCAAAGAGCAAGAAACTACCATAAACGAACTGTATGAAAAATATAAAACTGAACGACAATGCAACCTTCTTATAGCGAAGGCTTTAGATCCTGATGGAAAAATATCTCCTGCATTCATATCTCGTAAGCTTAAACAACTAGGTCTTCTGTTTGCCCGAAAGAAAAGGCTTGTCAAGGCTAATGCACCTTTGTCAGCTGATAGAGATCGAACAGTCATTGGAACAGCTTCCAATGCTACGACTCAGCTTGACATGAACAATGCAGAAAATAAAATTTCCCCCAAAATTTCTAGAAGAAAGCGAATACGAGCATTCAGCTTAGAAGAGGAGAGTCAGATCACAATCCTATATGAAAAGTTTAAAGGCCATAAGAAACCGAATGTCATGATTGCTAATACTCTCAATCCTGACAAGAAATTCACTGCGGCTGAAGTTTCACGCAAGCTTATACAGCTTGGTTTATTGCCTCCAAGAAAGAGGCCATCCGTGTTGGAGAAACACAAGGAACGGGATGAATTCAATATCAAAACAGAGAACTCTGATGAGGAAACGCTTCTATCTTTTAGTGAGCGAAGCAATAGAAAGAAGAGCATACCAGGAACACATGCTGCAGCAGGAGCAAGTGGTTCAACTCAGACAAAAGCAATGGCTCCAGAAAATGATTCCGATGATGACATGGTTTTGAAATCCTTTTTCAAAGGTGGCTCGGCCAAACGTGAAATGAAGCCAGCGGCAGCAGCTCAAGATGACCGAGCAGAAGCAGCAGCAACAGAAATAGCAGCAATGGCAGAAGCAACAGCAACAGAAATAGCAGAAGCAGCAACAACAGAAAGAGCAGTAACAGCAGAAGCATCAGCAACAGGCTCCAAAGCAAGACATACTGAATTGTTGGAGGACATGCTTGACTCTGGAGATGAAATGGGCCGTCTCGTTGAACCTCAAAAATTGGGGTCCAGAAAAAGAATGGTGCTCAATATCGACGAGGACGATTGAAGCATTATGCAATACCATACCCTGTTGATCTCTCCAACAACTTGATGTGGCCTATATATAAAGTTCTGATGCCACCCGTCATCTATTTATAATAAAATATTTTATCATATTATATCTTAAAGTGTGACACTTTATATCTAATTATTAAAGAATAATTCTAAGATTAGCGATACAATAATGTTTTATTTGTAAGTATTAAAGTTTAGATATTGGATGTATACTTTGAAGATCGAGGTGTTATGCATGCAAAGTCT

Network for GWHGAAEX003578

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04821.13	TIMELESS	27	275	1.60E-55
PF05029.12	TIMELESS_C	718	1030	6.20E-23

Protein Sequence

>GWHPAAEX003578
MNTEGLCMICTGFGIADEDENGNVRGYTKTEYCLDNLKDLQRFLRRDDPQRRDVFKQICKWNTVSRDIVPIIEHYQSDGILVTNSVKILVFLTMPVDPDSAEVAQQIEYLWELKAVLTRNVTIAVIVTLLEEPLGHLESGAFTEDDWKLVQLVLTLFRNILAIQSITIQQKASGSATELFYLTERFLELMFQENVMDLILVLAQHIDDPDGYVRQDNLLLLEIFHHILLGKDPELIAKTFSVNHKTSTGSASSDPLRSLIEAEDEKRRAFKQRKFECRSKLSGTFTRFSMDGSKMLLKNPASAFANGLAKARKVQRGSLKKIAYDNDSLAPQEENILELLHNFLNQFLAGGYNDFMQTIRDDIIKEQLDIQKSDIISFFQATHFITAFHQKKILTKGQNMENMEHESSVDSQPADYLSLHQDLCGPIAATMNEAMYSLVMSKWREVSDGIKITNDYKFLTAAGSLLKSMVRMLDLVLKLQPEDSKECQTARVMLYKLFYDQTDEGLTQFLLNRFKCFDSHKQPKSDLADLLEIIHIMLRLMEKLQAHGTLRVSKKTRKRTVRNKASKDKIEVESELTKEPEIANEHAESPSTTYTDPAKSVNEKLSKLSSVEKDQAFNECSLNPTSPGAFSNPLLNTELCHDHLSAAQDDEENMKSADQEYETGSSSNTEEPATNEVNFNISALVSSFASNTVIHNLCWLLRHYTVNSASTNHYILCMLRRFCEDLELSPMLYQLSLLTIFYEILAELKTCKSKKYMDIINFLTKFLRKMFKTMKKQPLLFVEILFWKTRRECQFINAEILVESIGNLRKGVRNLEDDQTGAFNHHRNMGYRSIADALGEDEIDLDLSQMRHDRRVEQLSNRATQSQVENSNISYSSENETGNERSENPSSLQANETTRWNNNLKFTKEQETTINELYEKYKTERQCNLLIAKALDPDGKISPAFISRKLKQLGLLFARKKRLVKANAPLSADRDRTVIGTASNATTQLDMNNAENKISPKISRRKRIRAFSLEEESQITILYEKFKGHKKPNVMIANTLNPDKKFTAAEVSRKLIQLGLLPPRKRPSVLEKHKERDEFNIKTENSDEETLLSFSERSNRKKSIPGTHAAAGASGSTQTKAMAPENDSDDDMVLKSFFKGGSAKREMKPAAAAQDDRAEAAATEIAAMAEATATEIAEAATTERAVTAEASATGSKARHTELLEDMLDSGDEMGRLVEPQKLGSRKRMVLNIDEDD

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.080
SRP064423	SRR2545915	Juvenile tuber	5.320
SRP108465	SRR5643513	five period of Gastrodia elata	3.830
	SRR5643514	five period of Gastrodia elata	4.070
	SRR5643515	five period of Gastrodia elata	3.420
	SRR5643524	five period of Gastrodia elata	3.770
	SRR5643525	five period of Gastrodia elata	0.730
	SRR5643528	five period of Gastrodia elata	0.610
	SRR5643658	five period of Gastrodia elata	0.900
	SRR5643659	five period of Gastrodia elata	2.900
	SRR5643660	five period of Gastrodia elata	3.270
	SRR5643661	five period of Gastrodia elata	3.500
	SRR5643662	five period of Gastrodia elata	1.450
	SRR5643663	five period of Gastrodia elata	2.650
	SRR5643664	five period of Gastrodia elata	1.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.350
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.420
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.940
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.660
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.330
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.850
SRP279888	Gastro	Gastrodia elata tuber	3.29
	Juven	Juvenile tuber	1.92
	Mother_Gastro	Mother tuber of Gastrodia elata	1.01
	Mother_Juven	Mother tuber of Juvenile	0.90