Gene detail

Detail information of GWHGAAEX003584/evm.TU.scaffold_138.69

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|42524005\|ref\|NP_969385.1\|	4.00E-157	multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
KOG	KOG0054	0	Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily
nr	gi\|743755979\|ref\|XP_010914331.1\|	0	PREDICTED: ABC transporter C family member 10-like [Elaeis guineensis]
Swissprot	tr\|Q9LYS2\|AB10C_ARATH	0	ABC transporter C family member 10
trEMBL	tr\|B9RIN7\|B9RIN7_RICCO	0	Multidrug resistance-associated protein 1, 3 (Mrp1, 3), abc-transoprter, putative {ECO:0000313\|EMBL:EEF49009.1}
TAIR	AT3G59140	0	multidrug resistance-associated protein 14

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000143	2374355	2411475	-

Transcript Sequence
>GWHTAAEX003584 CGGACCGCAACACCTGGCCGAGGCCGCAGGTTTTTCGCGTTTTAGGGGGAGGGGTTTCTATGATACGAATTTAAAAAGCCACTGGACGTCCGGAAGAGCCAGGAGGAGAACGAGCTCCTGGAAGGCGCGGTGCGGTAACCTCCCCTTTTTCAATAATGGCAGGGCGGCATGCGGCTCCATTGCGGGAGGAGGAAGGGAGGTGGGAAAGGTTCACCACCCTGACAAAAGTTTACCCCCATGAAAAACGTGCTTGCCGTAGCCTCTTGGCTTCTTCTCCTTTGTCCTGGACTTGTCTTCGTTTTTCTCCACTTTCCCTTTTTCATTTCCTCGACCGCCCTCAGCTTCGATGCGATTTCCCGGAATGTAGGCAGTTTTTTAATCTATTTACTCGATCAATCTCCTTGATTCTTTTTTCTTTGAAGCAGGATTCTTCGTTTTGGCTCTGCAATTCAGTGGCAAGGGTGGCCGAAGCAAAAGAAAAGAATTATCAAGCTGTTCACTGAGCCACTACAATAAGCTATGATAGGCTCACAAAACTCTTGGTAACAAAATACAAATCAGCATTCACTTCAGCAGTGTGATAAGCTTTGGAAAAGGAACTGCACACATATCAAATTTTCCTTGGAATGGATTACCTCACTCGTTCAACATCCGCCTTTTGTGGTGATTCCATTTGTTCATTTTATGATGGAAAAAACTGTGGTTTGCACATCCTTTACTCCAACACTTGTGTGAACCACTTCTTAGTCATCTGCATCACCCTGCTGCTGTTCTTTGCGTTTCTTATGAACTTTGTTCCCAAGTTGTCATCAAGAGTGATTACAATGCAAACACTTTTTCATCTATCGATTCCTTTGAATTTGTCTTCCATTTTCTTTAATGGATGCTTGGGATTTGCTTATCTTAGCCTTGGACTATGGATATTGGAAGAGAGACTAGGGAAGGGAGAGGGTTTCTTCCCTTTACATAGGTGGCTGGTTCTGTTTTCTCAAGGTTTTTCCTGGGTTCTTATCGGCTTGGTGGCAAGCCTCAGAGCCAAACAGCTTGGAGAGGCATTTATCAAGGTCTGGTCTGGAGTTGCTACTGCATTTGCATCTTATATTTGTATTTCTTCTGTTTTGGGCATTCTTTTTGAGAGGATTATATCAGTTAAGCTTGCTCTAGATCTTCTTACCTTACCAGGAGCTATATTGTTACTTCTTTGCATTTTCAAGGGACCCCAAGAAGATTATGACTCTCTTGCTAGCTCTTTCTATGAGCCTCTTAGTAATGATTCCTTAACAAAACCAAATTCTTCAAATATATTTGTAACTCCTTTTGCAAATGCTGGATTCCTCAGCAGAGTGTCATTCTGGTGGTTGAACTCTTTGTTAAAGAAGGGCTGTGAGAAACCCTTGGATGAAAAGGATATACCTCATATGGGTGAAATGGATCAAGCAGAAAGCAGATACTTTATGTTTCTTGAGCAACTCAGTAGACAAACCCAGAGAATCCCCACCACCTCCCCATCTTTCTTCAAGGCTATAGTTTCTTGTCATAAAAAAGAGATTTTAGTTTCTGGCCTCTTTGCATTGCTAAAGGTATTGACCCTGTCTGCTGGCCCAATGCTATTGAATGCCTTTATAAAAGTCTCTGTAGGCATGGGAACTTTTAAATATGAAGGGTATGTGTTGGCATTGGGGATGTTTTTGGTGAAATTTTTTGAGTCATTATCTCAAAGGCAATGGCATTTTCGCACTAGAATGGTGGGTCTTCAGATCAGATCATTGCTTTCAGCAGCTGTTTATCAAAAGCAGTTGAGGCTTTCAAGCTCGGCCAAGCTAATACATTCATCCGGAGAGATCATGAATTATGTTACAGTTGATGCATATAGGGTTGGGGAATTTCCAGTCTGGTTTCATCAGACATGGACTACTTGCATGCAACTGTGCATTGCTTTGGTGATTCTGTACCATGCTGTTGGCCTTGCCACAATATCATCCATGGTTGTGATAATACTTACAGTTTTATGTAATGCTCCTGTGGCTAAGCTTCAACATAAATTCCAGACAAGACTTATGGAGGCTCAAGATGAGAGACTTAAGGCTATGTCAGAAGCACTAGTGAATATGAAGGTTCTAAAGCTGTACGCTTGGGAAACCCATTTCAAAAAAGTTATCGAAGTCTTGAGAGAAGAAGAATGCAAGTGGCTGTCAGCATTTCAGTTACAAAGAGCATACAACAGCTTTCTTTTCTGGTCATCTCCTGTTGTAGTTTCTGCTGCAACCTTCTTAACTTGCTATCTTATGGAAATTCCTCTTTATCCTAGCAATGTCTTCACATTTGTAGCAACACTTCGTCTTGTTCAAGACCCAGTTAGATCAATTCCTGATGTTATTGGAGCTTTTATTCAAGCAAAAGTTGCATTTGGCAGAATTGTTAAGTTTCTTGATTCTGAAGAGCTTCGGAGTGGAAATGTTAGAAAGAGTTGCACTGTTAATGTAGACCATCTAATCATGATCAAGTCAGCAAGCTTTTCTTGGGATGGCAATTCTTCAAAACTTACACTCAGGAACATAAACTTAGAGCTTAAGCCAGGAGAAAAGATTGCAATATGCGGTGAAGTTGGATCTGGAAAATCAACTTTATTGGCAGCAATTCTTGGAGAGATACCGAACACAGAAGGCATGATCCAAGTCTTTGGAAAGATTGCATATGTTTCACAAAATGCATGGATTCAAACTGGAACTGTACAAGAGAACATTTTATTTGGTTCTACAATGAACAGGCAGAAATACCAGGAAGCCTTAGAAAAATGCTCCTTAGTGAAAGACCTTGATATGCTACCCTTTGGAGATCTTACAGTAATAGGAGAACGAGGGGTCAATCTCAGTGGCGGGCAAAAGCAACGTGTTCAGCTTGCCCGTGCATTGTACCAAGATGCAGAAATATATCTTTTAGATGATCCTTTCAGTGCTGTTGACGCTCATACCGCTACTAACTTGTTCAATGATTATGTTACAGGAGCTCTTTCTTCAAAAACAGTTCTTTTAGTTACTCATCAAGTGGATTTTCTTCCAGCATTTGACTCTATTTTGTTGATGTCAGAGGGAGAGGTCCTCCGTTCTGCTCCTTACCATGAACTGATGATTTCAAGCAAAGAATTTAAAGACCTTGTTAATGCACACAAAGACACTGCTGATTCTGAAAGCCTCGAGAAGGTTATCTCTCATAAAAGCAGCATGCACACAAGAGAGATACATGACACTTTCATTAATAATCAACAGAAAATAGCTAAGTCTTCAGGTGAAGATCAATTGATTAAGAAAGAAGAGAAAGAGTCTGGAGATACTGGTCTCAAACCTTATTTGCAATATCTGAATCAGAACAAGGGTTTCTTGTACTCTTCACTGGCAGCTCTTTCTCATATAATATTTATATCAGGTCAAATTTCTCAGAACTCTTGGATGGCAGCAAATGTTCAGAACCCACAAGTGAGCACATTGAGATTGATCACAGTATACCTGGCCATAGGGTGTAGTACAGCTGTCTTTTTGTTATCTAGATCTGTATTTGTTGTTGTTCTTGGCCTTCAGTCATCAAAATCATTGTTCTCCCAACTGTTAAACTGCTTGTTTCGTGCACCAATGTCGTTTTTTGATTCTACTCCACTGGGGAGGATATTGAGCCGGGTCTCTTCTGATTTGAGTATTGTTGATCTTGATGTACCATTTAGTTTAATCTTTAGCATCAGTGCTACATTAAATGCATATAGCAACCTTGGTATACTGGCTGTAATCACATGGCAAGTCTTATTTGTCTCTATTCCTATGGTCTATTTGACCATCCGACTGCAGGCTTATTACTTGGCTTCTGCAAAAGAATTGATGCGAATAAATGGTACTACAAAATCTCTTGTGGCCAACCATCTTTCTGAGTCTGTCTCTGGGGCCATGACAATCAGAGCCTTTCAAGAAGAAGATCGTTTTTTTGCAAAAAATCTGGAGCTTATTGATAGTAATGCCAGCCCGTTCTTCCATAATTTTGCTGCAAGTGAATGGTTGATTCAACGTCTAGAGGTCATGGGCGCTGCCGTTCTTTCAACTTCAGCCCTTGTGATGGCCCTTCTTCCTCCAGGAACTTTTAGCTCTGGATATGTGGGGATGGCTCTGTCCTATGGTTTTTCATTAAATATGTCTCTTGTTTTCTCAATTGAAAATCAATGCACACTAGCAAATTACATAATATCTGTGGAAAGGCTGAATCAGTACATGCAAATATCAAGTGAAGGCCCTGAAATTGTTGGAGGCAACCGACCACCACCAAATTGGCCAACCATTGGCAAAGTGGAACTCCGAGACTTGAAGATAAGATACAGACAAGACACTCCACTTGTTCTTCGGGGAATTAGTTGCACTTTTGAGGGAGGACACAAGATTGGGATAGTTGGACGAACTGGAAGCGGGAAAACCACCCTAATTGGTGCACTGTTTCGTCTCATCGAGCCCGCCTGGGGAAAAATAATCATAGATGGCCTCAATATTGCGACAATTGGGTTGCATGACTTGAGATCACGATTTGGGATCATTCCTCAAGATCCTACCCTCTTTCATGGATCTGTTAGATATAATTTGGATCCTCTAGGGCAGCATTCAGACCTTGAAATTTGGGAGGTCCTTGAGAAATGCCAACTCCGAGAAGTCGTTCAAGAAAAAGAGCAGGGACTAGATTCTCTTGTTGTTGAGGATGGATCTAACTGGAGCATGGGACAGAGGCAATTGTTTTGCTTGGGACGTGCTCTTTTAAGGAAAAGTCGAATTCTGGTGCTTGATGAGGCTACAGCATCAATTGACAATTCCACTGATGCTATTCTTCAGAGGACCATTAGAAAGGAATTCATTGATTGCACTGTCATAACTGTTGCTCACAGAATTCCAACAGTGATGGACTGCACCAAGGTGCTGGCTATTAGCGATGGTAAACTGGTGGAGTATGATAGCCCAATGAAACTTATGAAGACTGAGGGATCACATTTTGGGGAACTTGTGAAGGAGTATTGGTCCCACACAGTCAATGCAGATGTGAGGTCCTTGAAACCAATGTGAAGATGCCCCCCATATTGCATTTTGCATTTTAAATGATAATAAAGCTTCTTCTTTTTATTTCCTCCTGCGATCCCAAAGTAGGGTTAGGGTATTTTATTCTGTTTTAACTATTCTGGGTGTTTTCTCACATGGCTTTTGACCTATAGTTAACAATGGCTATCTATGTATATTTATACAAAATAATATATTAAAACTTGAAGACTTTTTTAATATTTTCTGTAAATCTTTCGATTTCAT

Network for GWHGAAEX003584

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	309	573	6.50E-24
PF00005.26	ABC_tran	641	775	2.50E-25
PF00664.22	ABC_membrane	922	1177	2.50E-24
PF00005.26	ABC_tran	1251	1399	2.30E-27

Protein Sequence

>GWHPAAEX003584
MDYLTRSTSAFCGDSICSFYDGKNCGLHILYSNTCVNHFLVICITLLLFFAFLMNFVPKLSSRVITMQTLFHLSIPLNLSSIFFNGCLGFAYLSLGLWILEERLGKGEGFFPLHRWLVLFSQGFSWVLIGLVASLRAKQLGEAFIKVWSGVATAFASYICISSVLGILFERIISVKLALDLLTLPGAILLLLCIFKGPQEDYDSLASSFYEPLSNDSLTKPNSSNIFVTPFANAGFLSRVSFWWLNSLLKKGCEKPLDEKDIPHMGEMDQAESRYFMFLEQLSRQTQRIPTTSPSFFKAIVSCHKKEILVSGLFALLKVLTLSAGPMLLNAFIKVSVGMGTFKYEGYVLALGMFLVKFFESLSQRQWHFRTRMVGLQIRSLLSAAVYQKQLRLSSSAKLIHSSGEIMNYVTVDAYRVGEFPVWFHQTWTTCMQLCIALVILYHAVGLATISSMVVIILTVLCNAPVAKLQHKFQTRLMEAQDERLKAMSEALVNMKVLKLYAWETHFKKVIEVLREEECKWLSAFQLQRAYNSFLFWSSPVVVSAATFLTCYLMEIPLYPSNVFTFVATLRLVQDPVRSIPDVIGAFIQAKVAFGRIVKFLDSEELRSGNVRKSCTVNVDHLIMIKSASFSWDGNSSKLTLRNINLELKPGEKIAICGEVGSGKSTLLAAILGEIPNTEGMIQVFGKIAYVSQNAWIQTGTVQENILFGSTMNRQKYQEALEKCSLVKDLDMLPFGDLTVIGERGVNLSGGQKQRVQLARALYQDAEIYLLDDPFSAVDAHTATNLFNDYVTGALSSKTVLLVTHQVDFLPAFDSILLMSEGEVLRSAPYHELMISSKEFKDLVNAHKDTADSESLEKVISHKSSMHTREIHDTFINNQQKIAKSSGEDQLIKKEEKESGDTGLKPYLQYLNQNKGFLYSSLAALSHIIFISGQISQNSWMAANVQNPQVSTLRLITVYLAIGCSTAVFLLSRSVFVVVLGLQSSKSLFSQLLNCLFRAPMSFFDSTPLGRILSRVSSDLSIVDLDVPFSLIFSISATLNAYSNLGILAVITWQVLFVSIPMVYLTIRLQAYYLASAKELMRINGTTKSLVANHLSESVSGAMTIRAFQEEDRFFAKNLELIDSNASPFFHNFAASEWLIQRLEVMGAAVLSTSALVMALLPPGTFSSGYVGMALSYGFSLNMSLVFSIENQCTLANYIISVERLNQYMQISSEGPEIVGGNRPPPNWPTIGKVELRDLKIRYRQDTPLVLRGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLIEPAWGKIIIDGLNIATIGLHDLRSRFGIIPQDPTLFHGSVRYNLDPLGQHSDLEIWEVLEKCQLREVVQEKEQGLDSLVVEDGSNWSMGQRQLFCLGRALLRKSRILVLDEATASIDNSTDAILQRTIRKEFIDCTVITVAHRIPTVMDCTKVLAISDGKLVEYDSPMKLMKTEGSHFGELVKEYWSHTVNADVRSLKPM

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05666	ABCC2	ABC transporters	map02010
K05666	ABCC2	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.650
SRP064423	SRR2545915	Juvenile tuber	7.910
SRP108465	SRR5643513	five period of Gastrodia elata	1.840
	SRR5643514	five period of Gastrodia elata	3.790
	SRR5643515	five period of Gastrodia elata	3.380
	SRR5643524	five period of Gastrodia elata	5.790
	SRR5643525	five period of Gastrodia elata	1.740
	SRR5643528	five period of Gastrodia elata	1.800
	SRR5643658	five period of Gastrodia elata	1.250
	SRR5643659	five period of Gastrodia elata	1.920
	SRR5643660	five period of Gastrodia elata	1.920
	SRR5643661	five period of Gastrodia elata	1.660
	SRR5643662	five period of Gastrodia elata	0.770
	SRR5643663	five period of Gastrodia elata	1.600
	SRR5643664	five period of Gastrodia elata	0.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.500
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.740
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.740
SRP279888	Gastro	Gastrodia elata tuber	1.11
	Juven	Juvenile tuber	1.50
	Mother_Gastro	Mother tuber of Gastrodia elata	0.86
	Mother_Juven	Mother tuber of Juvenile	1.51