Detail information of GWHGAAEX003591/evm.TU.scaffold_138.78


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|57641569|ref|YP_184047.1|3.00E-66exosome complex exonuclease Rrp41 [Thermococcus kodakarensis KOD1]
KOGKOG10688.00E-131Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases
nrgi|743755952|ref|XP_010914217.1|5.35E-157PREDICTED: exosome complex component RRP41 [Elaeis guineensis]
Swissprottr|Q84T68|EXOS5_ORYSJ7.00E-16Exosome complex exonuclease RRP46 homolog
trEMBLtr|M0TXN9|M0TXN9_MUSAM2.00E-153Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P05300_001}
TAIRAT3G616208.00E-1313'-5'-exoribonuclease family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014326949022721912-
Transcript Sequence

Network for GWHGAAEX003591

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01138.20RNase_PH191494.80E-38
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K11600RRP41, EXOSC4, SKI6 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.190
SRR2545915Juvenile tuber32.630
SRP108465SRR5643513five period of Gastrodia elata46.000
SRR5643514five period of Gastrodia elata39.680
SRR5643515five period of Gastrodia elata38.850
SRR5643524five period of Gastrodia elata40.850
SRR5643525five period of Gastrodia elata43.670
SRR5643528five period of Gastrodia elata49.230
SRR5643658five period of Gastrodia elata45.910
SRR5643659five period of Gastrodia elata58.250
SRR5643660five period of Gastrodia elata55.220
SRR5643661five period of Gastrodia elata49.570
SRR5643662five period of Gastrodia elata50.240
SRR5643663five period of Gastrodia elata52.770
SRR5643664five period of Gastrodia elata50.020
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_145.310
SRR6049655Rhizomagastrodiae_C368-T10_good_132.700
SRR6049656Rhizomagastrodiae_C368-T07_good_145.140
SRR6049657Rhizomagastrodiae_C368-T07_good_149.960
SRR6049658Rhizomagastrodiae_C368-T04_good_151.650
SRR6049659Rhizomagastrodiae_C368-T04_good_152.050
SRR6049660Rhizomagastrodiae_C368-T01_good_149.150
SRR6049661Rhizomagastrodiae_C368-T04_good_141.850
SRR6049662Rhizomagastrodiae_C368-T01_good_146.950
SRR6049663Rhizomagastrodiae_C368-T01_good_144.250
SRR6049664Rhizomagastrodiae_C368-T10_good_144.620
SRR6049665Rhizomagastrodiae_C368-T10_good_144.620
SRP279888GastroGastrodia elata tuber 58.81
JuvenJuvenile tuber63.64
Mother_GastroMother tuber of Gastrodia elata 38.91
Mother_JuvenMother tuber of Juvenile 40.21