Detail information of GWHGAAEX003592/evm.TU.scaffold_1383.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|159044908|ref|YP_001533702.1| | 3.00E-57 | urease subunit alpha [Dinoroseobacter shibae DFL 12 = DSM 16493] |
| nr | gi|672174953|ref|XP_008807555.1| | 1.03E-62 | PREDICTED: urease isoform X3 [Phoenix dactylifera] |
| Swissprot | tr|Q9SR52|UREA_ARATH | 8.00E-58 | Urease |
| trEMBL | tr|M0TYE3|M0TYE3_MUSAM | 4.00E-62 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P07840_001} |
| TAIR | AT1G67550 | 3.00E-57 | urease |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00001375 | 2784 | 5208 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003592
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01979.19 | Amidohydro_1 | 13 | 112 | 1.70E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01427 | URE | Metabolic pathways | map01100 |
| Microbial metabolism in diverse environments | map01120 | ||
| Purine metabolism | map00230 | ||
| Arginine biosynthesis | map00220 | ||
| Atrazine degradation | map00791 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006807 | Biological Process | nitrogen compound metabolic process |
| GO:0009039 | Molecular Function | urease activity |
| GO:0016151 | Molecular Function | nickel cation binding |
| GO:0016787 | Molecular Function | hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 88.100 |
| SRR2545915 | Juvenile tuber | 96.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 36.890 |
| SRR5643514 | five period of Gastrodia elata | 42.000 | |
| SRR5643515 | five period of Gastrodia elata | 35.170 | |
| SRR5643524 | five period of Gastrodia elata | 23.390 | |
| SRR5643525 | five period of Gastrodia elata | 106.790 | |
| SRR5643528 | five period of Gastrodia elata | 53.660 | |
| SRR5643658 | five period of Gastrodia elata | 61.650 | |
| SRR5643659 | five period of Gastrodia elata | 31.740 | |
| SRR5643660 | five period of Gastrodia elata | 37.770 | |
| SRR5643661 | five period of Gastrodia elata | 35.810 | |
| SRR5643662 | five period of Gastrodia elata | 45.030 | |
| SRR5643663 | five period of Gastrodia elata | 43.920 | |
| SRR5643664 | five period of Gastrodia elata | 51.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 118.500 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 121.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 155.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 86.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 133.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 108.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 103.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 78.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 85.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 73.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 73.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 97.07 |
| Juven | Juvenile tuber | 164.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 89.98 | |
| Mother_Juven | Mother tuber of Juvenile | 89.48 |