Detail information of GWHGAAEX003595/evm.TU.scaffold_139.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41972.00E-145FOG: PPR repeat
nrgi|720089994|ref|XP_010244950.1|0PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Nelumbo nucifera]
Swissprottr|Q9SVP7|PP307_ARATH2.00E-145Pentatricopeptide repeat-containing protein At4g13650
trEMBLtr|A0A061F2V6|A0A061F2V6_THECC6.00E-152Pentatricopeptide repeat (PPR) superfamily protein isoform 2 {ECO:0000313|EMBL:EOY11208.1}
trEMBLtr|A0A061F2V6|A0A061F2V6_THECC4.00E-58Pentatricopeptide repeat (PPR) superfamily protein isoform 2 {ECO:0000313|EMBL:EOY11208.1}
trEMBLtr|A0A061F2V6|A0A061F2V6_THECC5.00E-48Pentatricopeptide repeat (PPR) superfamily protein isoform 2 {ECO:0000313|EMBL:EOY11208.1}
trEMBLtr|A0A061F2V6|A0A061F2V6_THECC1.00E-25Pentatricopeptide repeat (PPR) superfamily protein isoform 2 {ECO:0000313|EMBL:EOY11208.1}
trEMBLtr|A0A061F2V6|A0A061F2V6_THECC2.00E-10Pentatricopeptide repeat (PPR) superfamily protein isoform 2 {ECO:0000313|EMBL:EOY11208.1}
trEMBLtr|A0A061F2V6|A0A061F2V6_THECC6.00E-10Pentatricopeptide repeat (PPR) superfamily protein isoform 2 {ECO:0000313|EMBL:EOY11208.1}
TAIRAT4G136502.00E-145Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001359609699312+
Transcript Sequence

Network for GWHGAAEX003595

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR1141434.90E-07
PF01535.19PPR3163460.001
PF01535.19PPR4915120.84
PF13041.5PPR_25175651.90E-08
PF13041.5PPR_26176645.80E-10
PF01535.19PPR6937130.37
PF13041.5PPR_27187653.50E-10
PF01535.19PPR7968220.26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.560
SRR2545915Juvenile tuber1.520
SRP108465SRR5643513five period of Gastrodia elata1.640
SRR5643514five period of Gastrodia elata2.790
SRR5643515five period of Gastrodia elata1.980
SRR5643524five period of Gastrodia elata2.120
SRR5643525five period of Gastrodia elata3.310
SRR5643528five period of Gastrodia elata2.240
SRR5643658five period of Gastrodia elata2.820
SRR5643659five period of Gastrodia elata2.700
SRR5643660five period of Gastrodia elata2.350
SRR5643661five period of Gastrodia elata2.400
SRR5643662five period of Gastrodia elata2.720
SRR5643663five period of Gastrodia elata2.740
SRR5643664five period of Gastrodia elata2.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.020
SRR6049655Rhizomagastrodiae_C368-T10_good_11.890
SRR6049656Rhizomagastrodiae_C368-T07_good_12.680
SRR6049657Rhizomagastrodiae_C368-T07_good_12.250
SRR6049658Rhizomagastrodiae_C368-T04_good_12.490
SRR6049659Rhizomagastrodiae_C368-T04_good_12.170
SRR6049660Rhizomagastrodiae_C368-T01_good_12.250
SRR6049661Rhizomagastrodiae_C368-T04_good_11.910
SRR6049662Rhizomagastrodiae_C368-T01_good_12.810
SRR6049663Rhizomagastrodiae_C368-T01_good_13.170
SRR6049664Rhizomagastrodiae_C368-T10_good_12.710
SRR6049665Rhizomagastrodiae_C368-T10_good_12.710
SRP279888GastroGastrodia elata tuber 3.45
JuvenJuvenile tuber2.55
Mother_GastroMother tuber of Gastrodia elata 1.91
Mother_JuvenMother tuber of Juvenile 0.88