Detail information of GWHGAAEX003597/evm.TU.scaffold_139.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220932003|ref|YP_002508911.1| | 1.00E-62 | DNA mismatch repair protein MutL [Halothermothrix orenii H 168] |
| KOG | KOG1979 | 0 | DNA mismatch repair protein - MLH1 family |
| nr | gi|672142774|ref|XP_008795250.1| | 0 | PREDICTED: DNA mismatch repair protein MLH1 isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9ZRV4|MLH1_ARATH | 0 | DNA mismatch repair protein MLH1 |
| trEMBL | tr|A0A097PJP5|A0A097PJP5_9LILI | 0 | MLH1 {ECO:0000313|EMBL:AIU48245.1} (Fragment) |
| TAIR | AT4G09140 | 0 | MUTL-homologue 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000135 | 114295 | 185036 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003597
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13589.5 | HATPase_c_3 | 47 | 150 | 4.30E-13 |
| PF01119.18 | DNA_mis_repair | 234 | 355 | 7.20E-29 |
| PF16413.4 | Mlh1_C | 448 | 727 | 3.20E-91 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08734 | MLH1 | Mismatch repair | map03430 |
| Fanconi anemia pathway | map03460 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006298 | Biological Process | mismatch repair |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0030983 | Molecular Function | mismatched DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 39.230 |
| SRR2545915 | Juvenile tuber | 44.760 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.010 |
| SRR5643514 | five period of Gastrodia elata | 28.070 | |
| SRR5643515 | five period of Gastrodia elata | 30.330 | |
| SRR5643524 | five period of Gastrodia elata | 29.090 | |
| SRR5643525 | five period of Gastrodia elata | 25.710 | |
| SRR5643528 | five period of Gastrodia elata | 21.210 | |
| SRR5643658 | five period of Gastrodia elata | 21.110 | |
| SRR5643659 | five period of Gastrodia elata | 29.670 | |
| SRR5643660 | five period of Gastrodia elata | 29.400 | |
| SRR5643661 | five period of Gastrodia elata | 27.270 | |
| SRR5643662 | five period of Gastrodia elata | 27.710 | |
| SRR5643663 | five period of Gastrodia elata | 27.240 | |
| SRR5643664 | five period of Gastrodia elata | 25.900 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 30.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 32.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 31.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 28.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 31.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 27.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 26.910 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.990 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 44.95 |
| Juven | Juvenile tuber | 35.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.69 | |
| Mother_Juven | Mother tuber of Juvenile | 33.69 |