Gene detail

Detail information of GWHGAAEX003598/evm.TU.scaffold_139.8

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1245	5.00E-164	Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains)
nr	gi\|743816225\|ref\|XP_010930587.1\|	0	PREDICTED: DDT domain-containing protein DDB_G0282237-like [Elaeis guineensis]
trEMBL	tr\|M0S9R4\|M0S9R4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P20730_001}
TAIR	AT5G08630	5.00E-164	DDT domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	188437	208031	+

Transcript Sequence
>GWHTAAEX003598 GAGCGTCGTGAGAACCGGGAGCGTGGTCTTCGCCCTCGAGCGAGAATCGGAGCGAAACACGGTCAAAACTTTTGGTTATCTTCTTAGGTTAAACCTGGGGTTTGGTTTGGCATTGTGAGAGCATTTGCTAATCAGTTCCAATGCCTCTTTATAAAAGAAAACCATTTCATCTGTCTGATTCACCACAGGATCTGGATCCAAATGAGCTTGTTTTTCAAGTTAGATTCACCAAAGAGATATTTCGGGATTATCAAGAATACTTGAATCGATTAAATCTTTATCGCCAAAGATTGTGGACATGCAAAGTTACAGGAAAAATTAATTTGACATATGAAGAAGCTTTAGTCTCAGAACATAATGCTACAGAAAGAGTGCAGCAATTCCCTGTAGAATTGGTGCCCCATGTTCTGAATAAGATCCAATGCAGCACTCTTAATCTAACAGAGCTTGTCAATGAAATACATAGCGATTTACAGAACAATCCTTACGAAGGCATAGAGCTGTATGCGAAGAAAGGGGACTCTCTGTGTGCTTGCAAAATCATAGAGGTTATGAAGAATGGGGATGGCATCAACACCAGATGCAGAGTGGGATGGATGAATAAAGATAAGCGGGTGACCGAAACGTCGGTAGTTTGCACCAGAGACCTGGTGCGCAAGAAGCCCCCTCTCAGCAGGAGCTTTTTGAAGGCTTTCATCAGAGAGTCCACCTCTCAGTCTTCTCCATGGCTGGTCCATGAGAAGCTCACCAAAAAGCACGGCATCCCCACCGTAAACCTTAAAAACCCACAGGATATTCAACTTTCGAGACTCAATAATTTTAAGAAGAGAAAATTTCAAAATGGCTGTGCCTCAGGAAGTTGGCTTGAGGGAGAGGCGGCGGTGGTGTATCCAATTGACGATCTGCTGGTGAAGACATCTGCCGGCGATCCGAGCTTGGTGGATCGGCCGATGCCTTCCACTGATTTCCTGGTGCCGATGGATTGCGTCGGGGACCTCCTCATGGTCTGGAACTTCTTCATCTCCTTTGGAAGCTTGCTTCACCTCTGGCCCTTCTCCTTCGAGGACTTCGAGAACGCCATCTGCCACAAGGACAGCGAGCTCATGCTCATGCTGGAGTGTCATTCCGCCGTCCTCAGGTTCCTCATCAAGGACGGCGGAGACTATTTCACTGCTGTGAGAACCAAGAAGCGCAAGCTGAAGGTCCGGCTGACCAACTGGGCCAAGTATCTGTGCCACTTCCTTGAGATGAAGAACAAATCCGACTCGTCCGATCACGTCCTCACCATAAAACGAGGGCATTACGGCCTTCTCGATGTTCGAATTAAGCTGGGCATTCTCTGTGATCTTGTCGCCGAGGTCCTCGCCACGGCTGCTATCAGAGCCAGCTTGGACGACTGTGTTCTGCAGAACAAAGCTCTTGCGGCTCGAAAAAGAGAGGAGGCCAGAACCAAGAAGAAGGAAGCTGGAGATCGCACCAAAGAAGTTAATCAGGAGCTCGTGCTGGTGAATGGGAAGAGGAGCTGCGCTAATTTTGCTGCTGTAAATGGAAGCGCGCCTAAATATAATAATGGGCATTTACGAGCCAATGGGAAGATTCAGTCACCGCACACAAAAATTGTCATGGAGAACGGAGAGCCGACACAAAGAACGGAGAATGAAGACGAAGAGAATCAGCAGAGAGAGCATCTCGAAAGGGAGAAAGAGAAGCTCTGGATTCGCTCGAATTGCATTGGCAGAGATAGAAACTTCAACAGGTATTGGTTCTTCCGGCGGGAGGGAAGGCTTTTTGTAGAGAGTTTGGATTCCAGCAGTTGGGGTTACTATTCTACCAAGGAAGAGCTTGATGTGCTTATGGGCTCATTGAATGAAAAGGGTGAGAGAGAGAGAGACCTCAAAAGGCAGCTTGAGAAGCACTATGTTAAGATCAGCACTGGGCTGCAGAAGAGGTCAAAGGAGAAGGCTCAGACGGCCCTTCTTGCGGATGAAGGGGAGCTCCGAAGATCAGCGAGGGTGCGATCTCAGCCCCGGTGCAGCCCAGCCATGACGTTTCACAAATACATCAACAAGTGGAAGGAAAGGCCTAATAAGCTCCCTAGACTACCCTTTAGCAATAGTAATGCCAAAAGAGGCCACAAATGCAGCAGTCTTAAGCTCCTTCTCCTCGACTCCCCTTCCTCCCCTCCTCCTTCATAGCATCTTTCAAACCCTAAAATATATTTTATTTATTATGCCCTTTTTTTCCTTAACTTTTGGCTAATTTTCATATCACAGACTACAATTAAATTAATTGTAAAAGTTCAACCCTTGGCCCTAGCCCTAGCCTATAGATCTCAAGTCATGTCCCCATTCCAATTTTTGATAATTATTTTGTAATATCAACTAATAGTCATCAAATCTCTTCTTCACTATATATATATATGTATATGTGCTAATATGAATTTCATGAAAAGTGCTATTCATACCATATTATTATCCATTTTATATAAAATATGATGATAATTTTTATGCTTAGTGGGAGGTATAAAGCTTCAAATT

Network for GWHGAAEX003598

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10537.8	WAC_Acf1_DNA_bd	24	114	2.10E-27
PF02791.16	DDT	281	338	9.60E-16
PF15613.5	WSD	526	592	6.70E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	DDT

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.660
SRP064423	SRR2545915	Juvenile tuber	17.770
SRP108465	SRR5643513	five period of Gastrodia elata	17.150
	SRR5643514	five period of Gastrodia elata	16.620
	SRR5643515	five period of Gastrodia elata	16.140
	SRR5643524	five period of Gastrodia elata	18.140
	SRR5643525	five period of Gastrodia elata	18.660
	SRR5643528	five period of Gastrodia elata	16.040
	SRR5643658	five period of Gastrodia elata	15.840
	SRR5643659	five period of Gastrodia elata	23.720
	SRR5643660	five period of Gastrodia elata	24.730
	SRR5643661	five period of Gastrodia elata	24.170
	SRR5643662	five period of Gastrodia elata	24.580
	SRR5643663	five period of Gastrodia elata	21.890
	SRR5643664	five period of Gastrodia elata	22.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.950
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.640
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.510
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.490
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.700
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.460
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.460
SRP279888	Gastro	Gastrodia elata tuber	25.88
	Juven	Juvenile tuber	23.79
	Mother_Gastro	Mother tuber of Gastrodia elata	20.43
	Mother_Juven	Mother tuber of Juvenile	21.26