Detail information of GWHGAAEX003600/evm.TU.scaffold_139.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 8.00E-113 | FOG: PPR repeat |
| nr | gi|672158650|ref|XP_008799069.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SIT7|PP151_ARATH | 2.00E-113 | Pentatricopeptide repeat-containing protein At2g13600 |
| trEMBL | tr|C5XUS3|C5XUS3_SORBI | 0 | Putative uncharacterized protein Sb04g022670 {ECO:0000313|EMBL:EES05239.1} |
| TAIR | AT2G13600 | 8.00E-113 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000135 | 235709 | 237669 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003600
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 101 | 129 | 4.40E-06 |
| PF01535.19 | PPR | 170 | 198 | 0.0052 |
| PF01535.19 | PPR | 200 | 222 | 4.50E-05 |
| PF01535.19 | PPR | 231 | 259 | 0.00019 |
| PF13041.5 | PPR_2 | 334 | 381 | 1.10E-08 |
| PF01535.19 | PPR | 409 | 435 | 0.78 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.430 |
| SRR2545915 | Juvenile tuber | 0.570 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.470 |
| SRR5643514 | five period of Gastrodia elata | 1.710 | |
| SRR5643515 | five period of Gastrodia elata | 2.070 | |
| SRR5643524 | five period of Gastrodia elata | 1.400 | |
| SRR5643525 | five period of Gastrodia elata | 0.270 | |
| SRR5643528 | five period of Gastrodia elata | 0.200 | |
| SRR5643658 | five period of Gastrodia elata | 0.030 | |
| SRR5643659 | five period of Gastrodia elata | 2.770 | |
| SRR5643660 | five period of Gastrodia elata | 1.760 | |
| SRR5643661 | five period of Gastrodia elata | 3.730 | |
| SRR5643662 | five period of Gastrodia elata | 2.290 | |
| SRR5643663 | five period of Gastrodia elata | 2.970 | |
| SRR5643664 | five period of Gastrodia elata | 2.460 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.870 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.790 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.670 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.30 |
| Juven | Juvenile tuber | 2.24 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.53 | |
| Mother_Juven | Mother tuber of Juvenile | 0.88 |