Detail information of GWHGAAEX003602/evm.TU.scaffold_139.13
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|302879021|ref|YP_003847585.1| | 4.00E-14 | thioredoxin [Gallionella capsiferriformans ES-2] |
| KOG | KOG0190 | 0 | Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) |
| nr | gi|672158642|ref|XP_008799065.1| | 0 | PREDICTED: protein disulfide-isomerase-like [Phoenix dactylifera] |
| Swissprot | tr|Q9XF61|PDI_DATGL | 0 | Protein disulfide-isomerase (Precursor) |
| trEMBL | tr|B3TM09|B3TM09_ELAGV | 0 | Protein disulfide-isomerase {ECO:0000256|RuleBase:RU361130} |
| TAIR | AT1G21750 | 0 | PDI-like 1-1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000135 | 240736 | 248269 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003602
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00085.19 | Thioredoxin | 36 | 142 | 1.90E-27 |
| PF13848.5 | Thioredoxin_6 | 173 | 353 | 3.80E-17 |
| PF00085.19 | Thioredoxin | 380 | 483 | 1.20E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09580 | PDIA1, P4HB | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045454 | Biological Process | cell redox homeostasis |
| GO:0003756 | Molecular Function | protein disulfide isomerase activity |
| GO:0016853 | Molecular Function | isomerase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 147.410 |
| SRR2545915 | Juvenile tuber | 219.930 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 279.400 |
| SRR5643514 | five period of Gastrodia elata | 272.150 | |
| SRR5643515 | five period of Gastrodia elata | 271.720 | |
| SRR5643524 | five period of Gastrodia elata | 294.710 | |
| SRR5643525 | five period of Gastrodia elata | 108.800 | |
| SRR5643528 | five period of Gastrodia elata | 199.550 | |
| SRR5643658 | five period of Gastrodia elata | 126.000 | |
| SRR5643659 | five period of Gastrodia elata | 226.690 | |
| SRR5643660 | five period of Gastrodia elata | 221.850 | |
| SRR5643661 | five period of Gastrodia elata | 240.950 | |
| SRR5643662 | five period of Gastrodia elata | 168.190 | |
| SRR5643663 | five period of Gastrodia elata | 193.850 | |
| SRR5643664 | five period of Gastrodia elata | 153.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 276.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 301.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 290.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 213.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 186.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 148.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 187.300 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 208.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 312.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 256.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 346.320 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 346.320 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 177.33 |
| Juven | Juvenile tuber | 213.76 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 169.63 | |
| Mother_Juven | Mother tuber of Juvenile | 187.80 |