Gene detail

Detail information of GWHGAAEX003604/evm.TU.scaffold_139.15

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672116851\|ref\|XP_008781596.1\|	PREDICTED: probable methyltransferase PMT26 [Phoenix dactylifera]
Swissprot	tr\|Q8L7V3\|PMTQ_ARATH	Probable methyltransferase PMT26
trEMBL	tr\|M0RRG6\|M0RRG6_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P11860_001}
TAIR	AT5G64030	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	300346	311408	+

Transcript Sequence
>GWHTAAEX003604 TCCATCCGACGCATTGAGGCGCCCCTCTTCCTTTCTCCTCAGCCGAAAACCTCCTTCCTCTCTCGATCGAGCGAAGCCCTCCCTCTCGTTCGAGAGCGTCTCCCCTCCACGACGCAATGAAGCGCCGAGTTCCTCCTCTCCGTCCTTGCTGAGGATCGATTCCTCCATCTTCCAATCGGTGCAAGTGCTTGCCGATCCTTGAGCTCGTCCATCTCTTTCACCGCGCTTCTGCTTCCTACTTCTTCGTGGTTCGCCGCCGGCAAGATGCTTAGCCAAGTGAATACCCTCCATTTAGTCTGCATCGAATGCATGAGCTTAAGGTTCCTAATCTAAGAGCTATAGAAGCTTCAAGGCCTTCGTCAAGATTATTATTCTTTAAGGCCGTCTACACTTTTTATCTCCAAGAAAATGGCATTTGGAAGGAATCAACGGTTTGACAGTAGGAAGTCATCTTCATATTGCTCATCAGCAACGCTTGTCGTGTTTGTAGCTTTGTGCTTGGTTGGAGTTTGGATGATGACATCTTCTACTGTAGTACCGGTAGAGCTGCCTACATCCGAAAAATCAGAAGTGACTGGTGAAATTTCAAACCGTTTGGAGGATGTTCCTGGGGATTCCTCTGAAGTCACAAAACAGCAGGATGTTCAAATGAAAGGAGATTCAGCTGTCGATTCTAACGTTTCAGTAAACTCAGATGATAACTCTGCTATCCAAACAAAGGGAGAGACGGAAGACTCTGTGAATACGCCCAAATCTCAGACCTATAATGATGAGAACGGAACAGCTGAAGGCGGCGAAGCAGCAAAGACAGTGGATAATATGGACACAGAAGATGGTGACAATGATTCGGTAGTTCAAAAGAAAGTGCAGGGCAAGGCTGGGAGCGATGATCAGAGCTCTAATGGGACTGTAAGCAATAATCAGCTGCAGCCTGATAGAGACGATAATTTCACAGAGTCACAGACGGAAGACTCTGATAATGAGAAAAGTGCGGAAGAAGCTGCCGGAGATAAGAATCAACTAGAGAGCAAGAGGAATTCGGAGGTGACAGATAAATCAAGTGATGATGCTGTGCAGGCTGAGCAAGATCGTGAGCAGATTAAGGAGAAGGATGAAGAAAATCGAGACATGGAGCCTGATAAAGCTGATCTTGAGAACACGACTGACGGTCAGCTGCCAAAGGATGAGGGTGCCAAGGATGTATTTCCTGATGGCTCACAGTCAGATCTTCTTAATGAGACCAATACTCAGAATGGGGCTTCTTGGTCTACACAAGCTGCAGAGTCAAAGAATGAGAAAAACGTTCAAGCATCCTCATCACTTGCAGGGGAAAAGCCATATAGTTGGAAGCTCTGTAATGTTACTGCTGGGGCAGATTACATTCCGTGTCTTGATAATGAGGAAGCCATCAAAAAGCTTCGAAGCACAAAACACTACGAGCATCGGGAAAGACATTGCCCCGAAGAGAGTCCAGTTTGTCTCGTCCCTCTTCCAAAAGGCTATTGTAAACCGATTCATTGGCCAAATAGCAGAGACAAGATATGGTACTCCAATGTTCCCCATACTCAGCTTGCGGAAATAAAGGGGCACCAAAACTGGGTGAAGGTTAGTGGCGAGCACCTAGTATTTCCTGGCGGCGGAACTCAGTTCAAAAACGGCGCACTTTACTACATTGATTTCATTCAGGAGTCGATGCCTGATATAGCGTGGGGAAAACATAGCCGTGTAGTCTTGGATGTAGGCTGCGGAGTTGCCAGCTTTGGGGGATACCTCTTTGACAGGGACACCCTCACCATGTCTTTTGCTCCAAAAGATGAGCACGAAGCTCAAGTGCAATTCGCTCTGGAAAGAGGAATTCCTGCTATATCAGCTGTTATGGGCACCTCTAGGCTCCCCTTCCCAAGCAGGGCCTTTGATCTTGTGCACTGTGCCCGTTGTCGAGTTCCATGGCACGCAGAAGGTGGCATGCTTCTACTGGAGCTGAATCGGTTGTTGCGTCCCGGTGGCCACTTTGTGTGGTCTGCTACTCCGGTGTACCGGAAGACCCAAGAAGATATGGAGATATGGAACGTCATGTCCGCCCTGACGAAATCCATGTGCTGGGAAATGGTCGCCAAAAGGAGGGACGCTCTGAACGAAGTCGGCCTGGCTATCTTTAGGAAGCCATTGAACAACAGCTGCTATGAGAAAAGAAAACCCCCTCTCTGCGATGAATCCGACAATGCAAATGCAGCCTGGAACATTGGGCTGCAAAAGTGCATCCACAAGCTGCCCGGCGATCCGTTGGTACGTGGCTCGCGGTGGCCAGAGGAGTGGCCGCTTAGGCTGGAGGCAACGCCCTACTGGTTGAACGGCTCGCAGGGAGGGGTGTATGGAAAGCCTGCCTCGGACGACTTCCAGGAAGATTACAAGCACTGGAAGAAGGTTGTTAGGGGCTCCTACTCCAACGGAATGGGCATCCACTGGCCTGCCATTCGCAATGTCATGGACATGAGATCTGTCTACGGAGGATTCGGTGCTGTCTTGAGCCAGAGCAAGAAGGTGTGGGTGATGAACGTTGTGTCGATTGATTCCCCAGACACCCTGCCGGTGATCTATGAGCGCGGGCTCTTTGGAATCTACCACGACTGGTGCGAATCCTTCAGCAGCTATCCCAGAACCTACGATCTCATTCATGCTGATCATCTCTTCTCCACCATCAAAGCCAGGTGCAAGATGGAGGCGGTATTTGTGGAGGTGGACAGATTGCTTAGGCCGGAGGGGAAGCTGATAGTGAGAGACAGCAAGGAAACTGCAGACGAGCTCCAGGACTTGGCCAAATCTCTCCATTGGGAGGTTCGCATGGCCTTCTCTGAGCAGGACCAGGCCCTCCTTTGCCTGCACAAGACCTCCTGGCGCCCCGATGAAGCCGCGGATGCCTGATTTTTTCCTGTTTTTTATTTTTTGCAACTTATTATTACATATATATCTTTTAGGTTTGTTTGTGTAAAGTAATTAATTCGTTGAGAATGCTTTATTAGTGTAATGCTGTATTGGTTGAGCATCTCTATTTCTTTTCAAATGTGTCTTTGGAGTCAGTACAAGTGAAAATGAGATGCCTAAGGAATACTCACATTTTGTAAAATCAATTCTAAATATTTGCCACAATTTTTCAAACATTCCCAAATATCTTTGCATCTTGATTTTTGCATTTTCAAATGTCTTGATAATATTGACCTTTGATGTGTGTTGATGCAATTAACATATCATTAATATAAAAAAGTAGGCAAATGAAGTGACCTTTGGGCAATCACACTGGCTAGTAGAGTATGCTCATGCATAAATTGATCATATATTT

Network for GWHGAAEX003604

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03141.15	Methyltransf_29	323	818	1.30E-221

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008168	Molecular Function	methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	38.070
SRP064423	SRR2545915	Juvenile tuber	47.010
SRP108465	SRR5643513	five period of Gastrodia elata	63.820
	SRR5643514	five period of Gastrodia elata	53.840
	SRR5643515	five period of Gastrodia elata	57.950
	SRR5643524	five period of Gastrodia elata	54.540
	SRR5643525	five period of Gastrodia elata	57.580
	SRR5643528	five period of Gastrodia elata	48.650
	SRR5643658	five period of Gastrodia elata	53.860
	SRR5643659	five period of Gastrodia elata	70.660
	SRR5643660	five period of Gastrodia elata	71.830
	SRR5643661	five period of Gastrodia elata	70.350
	SRR5643662	five period of Gastrodia elata	77.990
	SRR5643663	five period of Gastrodia elata	67.050
	SRR5643664	five period of Gastrodia elata	63.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	65.970
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	68.050
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	77.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	60.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	66.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	63.950
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	73.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	68.790
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	92.970
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	87.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	80.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	80.050
SRP279888	Gastro	Gastrodia elata tuber	63.66
	Juven	Juvenile tuber	58.72
	Mother_Gastro	Mother tuber of Gastrodia elata	80.60
	Mother_Juven	Mother tuber of Juvenile	51.99