Detail information of GWHGAAEX003606/evm.TU.scaffold_139.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 2.00E-84 | MADS box transcription factor |
| nr | gi|189214315|gb|ACD85092.1| | 2.12E-148 | B-class MADS-box protein PI [Brassavola nodosa] |
| Swissprot | tr|Q40702|MADS2_ORYSJ | 7.00E-110 | MADS-box transcription factor 2 |
| trEMBL | tr|G2XK88|G2XK88_BRANO | 8.00E-149 | B-class MADS-box protein PI {ECO:0000313|EMBL:ACD85092.1} (Fragment) |
| TAIR | AT5G20240 | 2.00E-84 | K-box region and MADS-box transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000135 | 316095 | 328069 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003606
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 10 | 57 | 5.10E-24 |
| PF01486.16 | K-box | 82 | 161 | 1.00E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-MIKC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.540 |
| SRR2545915 | Juvenile tuber | 11.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.040 |
| SRR5643514 | five period of Gastrodia elata | 7.660 | |
| SRR5643515 | five period of Gastrodia elata | 8.640 | |
| SRR5643524 | five period of Gastrodia elata | 6.870 | |
| SRR5643525 | five period of Gastrodia elata | 12.030 | |
| SRR5643528 | five period of Gastrodia elata | 13.420 | |
| SRR5643658 | five period of Gastrodia elata | 9.800 | |
| SRR5643659 | five period of Gastrodia elata | 11.750 | |
| SRR5643660 | five period of Gastrodia elata | 11.750 | |
| SRR5643661 | five period of Gastrodia elata | 9.420 | |
| SRR5643662 | five period of Gastrodia elata | 11.630 | |
| SRR5643663 | five period of Gastrodia elata | 13.510 | |
| SRR5643664 | five period of Gastrodia elata | 11.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.300 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.85 |
| Juven | Juvenile tuber | 31.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.25 | |
| Mother_Juven | Mother tuber of Juvenile | 26.66 |