Detail information of GWHGAAEX003607/evm.TU.scaffold_139.18
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|71907234|ref|YP_284821.1| | 3.00E-21 | protein kinase:GAF [Dechloromonas aromatica RCB] |
| nr | gi|672116907|ref|XP_008781626.1| | 0 | PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Phoenix dactylifera] |
| Swissprot | tr|Q8RXC8|RBK2_ARATH | 3.00E-72 | Receptor-like cytosolic serine/threonine-protein kinase RBK2 |
| trEMBL | tr|A0A068UTQ8|A0A068UTQ8_COFCA | 0 | Coffea canephora |
| TAIR | AT1G77280 | 0 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000135 | 331948 | 345512 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003607
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 401 | 614 | 1.60E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_RLCK-VI |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.230 |
| SRR2545915 | Juvenile tuber | 6.100 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.190 |
| SRR5643514 | five period of Gastrodia elata | 21.880 | |
| SRR5643515 | five period of Gastrodia elata | 23.680 | |
| SRR5643524 | five period of Gastrodia elata | 22.400 | |
| SRR5643525 | five period of Gastrodia elata | 9.020 | |
| SRR5643528 | five period of Gastrodia elata | 9.360 | |
| SRR5643658 | five period of Gastrodia elata | 9.360 | |
| SRR5643659 | five period of Gastrodia elata | 7.050 | |
| SRR5643660 | five period of Gastrodia elata | 5.260 | |
| SRR5643661 | five period of Gastrodia elata | 6.480 | |
| SRR5643662 | five period of Gastrodia elata | 8.910 | |
| SRR5643663 | five period of Gastrodia elata | 7.280 | |
| SRR5643664 | five period of Gastrodia elata | 7.540 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 24.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.720 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.920 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.44 |
| Juven | Juvenile tuber | 36.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.69 | |
| Mother_Juven | Mother tuber of Juvenile | 23.75 |