Gene detail

Detail information of GWHGAAEX003611/evm.TU.scaffold_139.23

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1929	6.00E-135	Nucleotide excision repair factor NEF2, RAD4/CUT5 component
nr	gi\|743816635\|ref\|XP_010930696.1\|	0	PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-A [Elaeis guineensis]
Swissprot	tr\|O04251\|Y4211_ARATH	2.00E-11	BRCT domain-containing protein At4g02110
trEMBL	tr\|M0T9R7\|M0T9R7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P24210_001}
TAIR	AT1G77320	6.00E-135	transcription coactivators

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	459979	479863	+

Transcript Sequence
>GWHTAAEX003611 ATGACGGCTAAGTTAGGCACATTTAGTGGTGCAAATGTCTTCCTCTCAAGAAACTTAGTCCCACCGGAGATTTTTGACGCCATCCATGACGCACTTCGACTGAACGGCGCTCATGTCTTCCTCTGCTGTGATCCTTCCCGGACTGCCCCTGATGATTATCATGTCATATCTTCTTCTGACCACGAAAAGTTTGCGGATCTTAAAGCAAAGGGCTGCAATCTTGTAGGACCACAATGCATTTTCTCCTGTGCAAAAGAGCATAGGATGTTGCCCAAGCGTGGCTACACATGTTGCATTGCAATGGATGGAGTCAAGGTCCTTGCATCTGGTTTTGATAAGGAAGAAAGGACTATGATTGAAAACCTAGTCATAGCTATGGGTGGAGTTGTGCAAACCAAAACATCAATGGATGTCAACTTTGTCATTGTAAAGAATGTTTTGGCTGCCAAATACAAGTGGGCTTTACATGTTCTTAAGAAACCTGTTGTTAGCATGAGCTGGTTATGCCAATGTTGGATTGAGCACCGTGTTGTGCCACAAGAGCCTTACAAAGTTCTTCCATTTATGGGTTTGACAATTTGTGTTACCAGAATTCCGGTAGATGAACGGAAGGAAATTGCAAGGCTGATCGTACAGAATGGTGGCAAGTATTCTGCTGATCTTACCAAAAACTGCTCCCATCTTTATGTGGTTGCAAAAAGATGGGGTCACATTCGTATTGTTGGTCGCAAATGGATTGAACAATCCATTTCAAAACGAGCCTGTTTGGATGAGCGGCTGTATCCTGTTCATGAAATTTTTGCTTCTGGAAATGATGCAAAATTTCTGCACAAGGAGCAATCTTTCCAGGAACCCAGTAATATAACCTCACAGCTTGTTCCACCATCTACAATTGATGACGAAGAAGCAGCTTCATCTCTTCTGGACATTTCCGTTTCAGAAAACTGTATTACTAAAAATGATGTTATTGAAGAACGTTCTATAAATTTGGAAGACATTGGCACTGAAACAAATTTAGAACAGATGGGAGACATTCCTAAATTTGATTGCCGAGTAGCTCCAGACTCGGATGAAGATTGTGATTATTTATCAAGTTGCCGCATCTTTCTAGCAGGTTTTGAAGGGAAGGAATTGAGAAGGCTTGTAAATATGATACGGAGTGGTGGTGGTACGAGGCATGTGTTTTTAAGCGCTAGGTTGACACACATAATTATAGGCACACCTTCAGAGGCAGAAAATAGAGAGTTAAGACCCTTGGTTGCTTTGGGTGCCATTAATCTGGTTAATGCTGCCTGGCTTGAGGAATCTGATCATGCAAAGAGAGAGCTTCCAGTATCATCCAGACACAATTTTTCTATATTAAAAGTTTCTAAAGCTGTCCCTGTTACAGAAAATAAGATTTCATCATCAAAGCTTTTATCAAATAAAAAACAAGGAACCAATGAGAGCTCTATAATTACGAATGACTCCGCAGCAGTAGTCTCTAGATGCAAACGCCCACGCCTAGATTCCATCAAGAAAAGTAATTTAATTGATGAAAGAAAATTGAATTCTTTTTCTACCATACGAGGTTCTTTGAATAGAAATGCAACTTTCAAAGGGAAATCATTCTGTTTTTCAAGCTCATTTCCTATAGAACATAGAGTTGAAGTTATTGAATGGGTTAAAGGAGGAGGAGGGATGATGTTAGATGACCATGCCAAAGATTCTGATTTCATCATCGAGAGTCATGGTCTTCCATATGTTGTACCTACGGATGTATCTTCATCAACCGCCGTTTCGACACATTGGATACGAACTTCTTTAGAGGAGTGCTGCATTCAAGATGTTTCAGACCACATGCTTTACTCTCCGTTACATTGCCACATTCCATTGCCTGGCATTGAAGGCCTCTGTTTTTGTGTCTCCCAATACGAAGGCAAAGAGAGAATTTTATTAAGAAACTTGTGCTTTGTATTAGGAGCAAAATTCACGGAAAAGCTGACCAAGAAAGTTACACATTTATTATGTAAGTTTACCAGCGGTCCAAAATACGACGCTGCTTGTAGAAAGGGAATTCAGACAGTTACTGCAGAGTGGATCGCTGCATGCGTCTCACAGGATAAATTGGTCACCCCTGATTCATTTCAGCCAAGGCCCGTTACTTCTGAGGATAAAGAGGCCGGCTTATGTACTGAGAGTCAGTATCCAACACAAGCTGCACATATGATATGTTTCACCTCGCAATCACAGAATGCTCATCAAGTTAAATCACAGCAGCACAATCGTGATCAACCTGCTGATGTTTCTAGCAACTCCAAAATTCCAGAAGGAGATGTGTTGGATGGAAGCCAATTAATGAAAGCTCAACAGGGAAAATGCAAAGTTGTTCCTGATGTTGCTGATGCCATTGAGGATTTCTTAGCGCAGACAGATACGAACAAGATCCAAGATCTACCATCAGCAGCAATGTCTGGTGGTGAAAGCAATATATATGCACCTGATCAAGCTAATATTGGTAAAAATCAAGAGAAGTCCCATGCTGCTTCCAGCTTATCAGGCACTAATAAGTTAAAGAGGACAAAAAAACAAGATAAATCTACCCATTCAAGAAAAAAAGCCAGAAACTCAGGCGGCCCATACGAACCTTTTAGTGAGACACAAACAGAGTCACAGGTGGTCGGGTATGAGGAAGACTTGTCCGGAAGGCAGAAAATAATTGAGAGGATTCGATCTCAAAGCTTCACATTGACACCAGATATTAGATAG

Network for GWHGAAEX003611

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12738.6	PTCB-BRCT	105	167	7.50E-07
PF12738.6	PTCB-BRCT	191	245	6.60E-10
PF12738.6	PTCB-BRCT	631	693	3.30E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10728	TOPBP1	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.540
SRP064423	SRR2545915	Juvenile tuber	18.930
SRP108465	SRR5643513	five period of Gastrodia elata	16.550
	SRR5643514	five period of Gastrodia elata	19.200
	SRR5643515	five period of Gastrodia elata	17.500
	SRR5643524	five period of Gastrodia elata	19.650
	SRR5643525	five period of Gastrodia elata	10.500
	SRR5643528	five period of Gastrodia elata	8.800
	SRR5643658	five period of Gastrodia elata	9.000
	SRR5643659	five period of Gastrodia elata	18.000
	SRR5643660	five period of Gastrodia elata	19.280
	SRR5643661	five period of Gastrodia elata	16.870
	SRR5643662	five period of Gastrodia elata	16.810
	SRR5643663	five period of Gastrodia elata	20.060
	SRR5643664	five period of Gastrodia elata	17.120
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.140
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.760
SRP279888	Gastro	Gastrodia elata tuber	26.25
	Juven	Juvenile tuber	26.59
	Mother_Gastro	Mother tuber of Gastrodia elata	24.62
	Mother_Juven	Mother tuber of Juvenile	26.19