Detail information of GWHGAAEX003612/evm.TU.scaffold_139.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|11499815|ref|NP_071058.1| | 7.00E-16 | peroxidase / catalase [Archaeoglobus fulgidus DSM 4304] |
| nr | gi|401761491|gb|AFQ02687.1| | 0 | chloroplast L-ascorbate peroxidase isoform 1 [Oncidium hybrid cultivar] |
| Swissprot | tr|Q42593|APXT_ARATH | 1.00E-170 | L-ascorbate peroxidase T, chloroplastic (Precursor) |
| trEMBL | tr|M4H7E2|M4H7E2_ONCHC | 0 | Chloroplast L-ascorbate peroxidase isoform 1 {ECO:0000313|EMBL:AFQ02687.1} |
| TAIR | AT1G77490 | 4.00E-170 | thylakoidal ascorbate peroxidase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000135 | 487793 | 502830 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003612
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00141.22 | peroxidase | 94 | 325 | 2.50E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00434 | E1.11.1.11 | Metabolic pathways | map01100 |
| Ascorbate and aldarate metabolism | map00053 | ||
| Glutathione metabolism | map00480 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006979 | Biological Process | response to oxidative stress |
| GO:0004601 | Molecular Function | peroxidase activity |
| GO:0020037 | Molecular Function | heme binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.550 |
| SRR2545915 | Juvenile tuber | 48.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 64.890 |
| SRR5643514 | five period of Gastrodia elata | 78.170 | |
| SRR5643515 | five period of Gastrodia elata | 73.520 | |
| SRR5643524 | five period of Gastrodia elata | 71.950 | |
| SRR5643525 | five period of Gastrodia elata | 48.900 | |
| SRR5643528 | five period of Gastrodia elata | 49.880 | |
| SRR5643658 | five period of Gastrodia elata | 45.400 | |
| SRR5643659 | five period of Gastrodia elata | 43.260 | |
| SRR5643660 | five period of Gastrodia elata | 39.020 | |
| SRR5643661 | five period of Gastrodia elata | 48.440 | |
| SRR5643662 | five period of Gastrodia elata | 58.530 | |
| SRR5643663 | five period of Gastrodia elata | 47.840 | |
| SRR5643664 | five period of Gastrodia elata | 52.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 76.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 81.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 66.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 60.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 60.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 69.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 74.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 100.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 85.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 78.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 78.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 65.96 |
| Juven | Juvenile tuber | 60.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 39.04 | |
| Mother_Juven | Mother tuber of Juvenile | 39.69 |