Detail information of GWHGAAEX003615/evm.TU.scaffold_139.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|18978284|ref|NP_579641.1| | 7.00E-88 | hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638] |
| KOG | KOG4355 | 0 | Predicted Fe-S oxidoreductase |
| nr | gi|695057315|ref|XP_009416924.1| | 0 | PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q2R1U4|CK5P1_ORYSJ | 5.00E-30 | CDK5RAP1-like protein |
| trEMBL | tr|J3LY12|J3LY12_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB04G20370.1} |
| TAIR | AT1G72090 | 0 | Methylthiotransferase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000135 | 507148 | 529567 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003615
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00919.19 | UPF0004 | 52 | 130 | 1.50E-19 |
| PF04055.20 | Radical_SAM | 191 | 361 | 3.50E-19 |
| PF01938.19 | TRAM | 413 | 473 | 6.70E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006400 | Biological Process | tRNA modification |
| GO:0035600 | Biological Process | tRNA methylthiolation |
| GO:0051539 | Molecular Function | 4 iron, 4 sulfur cluster binding |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0051536 | Molecular Function | iron-sulfur cluster binding |
| GO:0035596 | Molecular Function | methylthiotransferase activity |
| GO:0035598 | Molecular Function | N6-threonylcarbomyladenosine methylthiotransferase activity |
| GO:0016740 | Molecular Function | transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 76.140 |
| SRR2545915 | Juvenile tuber | 63.580 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 41.830 |
| SRR5643514 | five period of Gastrodia elata | 36.690 | |
| SRR5643515 | five period of Gastrodia elata | 37.410 | |
| SRR5643524 | five period of Gastrodia elata | 35.220 | |
| SRR5643525 | five period of Gastrodia elata | 27.680 | |
| SRR5643528 | five period of Gastrodia elata | 25.290 | |
| SRR5643658 | five period of Gastrodia elata | 35.870 | |
| SRR5643659 | five period of Gastrodia elata | 44.090 | |
| SRR5643660 | five period of Gastrodia elata | 45.360 | |
| SRR5643661 | five period of Gastrodia elata | 39.220 | |
| SRR5643662 | five period of Gastrodia elata | 38.460 | |
| SRR5643663 | five period of Gastrodia elata | 41.290 | |
| SRR5643664 | five period of Gastrodia elata | 48.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 57.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 68.870 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 50.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 66.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 64.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 65.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 66.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 56.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 33.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 43.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 55.38 |
| Juven | Juvenile tuber | 84.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 47.61 | |
| Mother_Juven | Mother tuber of Juvenile | 57.54 |