Gene detail

Detail information of GWHGAAEX003616/evm.TU.scaffold_139.28

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1277	Endosomal membrane proteins, EMP70
nr	gi\|743816890\|ref\|XP_010930775.1\|	PREDICTED: transmembrane 9 superfamily member 1 [Elaeis guineensis]
Swissprot	tr\|Q940G0\|TMN1_ARATH	Transmembrane 9 superfamily member 1 {ECO:0000305} (Precursor)
trEMBL	tr\|M0SBA8\|M0SBA8_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P02900_001}
TAIR	AT1G10950	transmembrane nine 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	529885	540116	-

Transcript Sequence
>GWHTAAEX003616 ATGGGTACGGAAGACGCGTTCTAATAGAGAGCGTCCGGCCGGCCGGGCGGACCGGATCGGACCGCGCTAGCTCGATCGGTTCACCGACCCACGCAGTATCGTATATTTCCCTATTCATGGTGCTTGCTCGCCCATTCCGACTCTAGATCAAGTCTAAGGCCTTCTCTTCTGTCCAAAATTCCCCGTGATTCGATTCTGCACTTTTCCTCTCTTTCATCAGCCGATCTGCGGGACGAAGCGGATCGTGCCTTTCCCCGCGGATCTGCGGCAGCCATGCTTTTAACAGAGAGATCTCTACTTCTTTTTGCCGTCGGCCTCGTCTTTGTTGTCCTCACTGCATCGCCGGCGTCTGCGTCGGAGTCCGACCACAAGTATCAAACTGATGACCCGGTAACACTATGGGTGAACAAAGTGGGTCCATTTAACAACCCACAAGAAACATACAACTATTACAGCCTTCCATTTTGCCAGCCTGGACAGAACCCTTCTCACAAGTGGGGTGGCCTCGGAGAGGTTTTGGGTGGAAATGAACTGATTGACAGCCAGATCGAAATAAAATTCCAGAAAAATGTTGATAAAGGATCCATTTGCTCTCTCGAGCTTGATGATGACAAGGTGACACGGTTTAAGGATGCCATTGAGGAATCCTACTGGTTTGAATTCTTTATAGACGACTTGCCTTTATGGGCTTTTGTTGGAGAAACTGGAAAAACTGATGAGAGAAAGCATTATCTCTTCACGCACAAGAACATACTTGTGAGATACAATGGCGATCAGATTATTCATGTTAATATAACCCAAGAAAACCCTAAACTGTTGGAGCCCAGAAAAGCGTTTGAGATGACATACTCGGTCAGATGGATCCCAACGAATATAACATTTGCTCATCGTTTTGATGTGTACTTGGATTACCCTTTCTTCGAACACCAGATCCACTGGTTTTCGATCTTTAACTCCTTTATGATGGTTATTTTCCTCACTGGCCTTGTGTCAATGATATTGATGCGGACTCTCAGAAACGATTATGCGAAATATGCTCGTGAAGATGATGATTTAGAGACTCTGGAAAGAGATGTGAATGAAGAGTCAGGTTGGAAACTTATTCATGGGGATGTTTTCAGGCCTCCCAGAAATTTGGCCCTTCTCTCTGCCGTTGTTGGCACCGGCGCCCAGCTTGCGTTACTCGTACTCTTGGTCATCTTATTGGCTATAATTGGGATGCTTTATGTTGGGCGAGGAGCGATTCACACGACGTTCATACTGTGCTACGCATTCACGTCATTCGTATCGGGCTACGTTAGCGGTGGCCTCTATTCCCGGAACGGCGGCAAGAGGTGGATAAAGTCAATGGTGCTGACGGGGTCGGTGTTCCCGGTGGCGTGCTTCGGCATAGGATTCGCTCTGAACACGGTGGCGGTCGTCTACGGGTCTCTGGCGGCGATTCCGTTTGGGACAATGGTGGTAGTTGTGGTGATTTGGGGGCTGATCTGCTTGCCTCTGACTTTGCTGGGCACAGTGGTGGGCAGAAATTGGAGCGGTAGCCCGGGGAGCAACCCCTGCCGCGTAAAGACCATTCCCCGCCCAATTCCCGCCAAGAAGTGGTACCTCACTCCATCCGTAGTTTCCCTCATGGGCGGCCTCCTCCCCTTCGGCTCTATTTTCATTGAGATGTACTTCGTCTTCACTTCCTTTTGGAACTACAAGGTGTACTACGTGTACGGGTTCATGCTGCTGGTGTTTTTGATACTGATGATCGTGGCCGTCTGCGTGACGATCGTGGGGACGTACTTTCTGCTGAATGCGGAGAACTATCACTGGCAGTGGACGTCCTTCTTCTCGGCGGCGTCGACGGCGGCGTACGTCTACGTCTACTCCGTATATTACTACTGCGTCAAGACGAAGATGTCGGGCTTCTTTCAGACCGCCTTCTACTTCGGCTACACCCTCATGTTCTGCATCGGCCTCGGAATGCTCTGCGGGGCGGTAGGATTCCTTGGATCCACAATGTTCGTGCGGAGAATTTACAAGAACATCAAGTGCGACTGAGGAACAACAAGACAGACGATGAACAAGTAGGATTTTTGGTTTTAATATATAAATTTATTTCTTCAGATATCTATATATATGATCCTTTTTTAGATGACTCTAAATTTTGAATTTTTATTGGCTGTATTTTTCTTAAATTTATTTTGGAGGCGAGGAGACGATTAATTGATAATGCAGTAATCTTTATTTTGTTTTTTCCCACAATTTGTGCGATTTATAAAAATCCTCTCGGGCTCTTTTATTTCTTGAGATATTTATATATATATATATTATT

Network for GWHGAAEX003616

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02990.15	EMP70	57	547	1.20E-167

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	46.500
SRP064423	SRR2545915	Juvenile tuber	60.720
SRP108465	SRR5643513	five period of Gastrodia elata	113.390
	SRR5643514	five period of Gastrodia elata	86.570
	SRR5643515	five period of Gastrodia elata	120.340
	SRR5643524	five period of Gastrodia elata	101.660
	SRR5643525	five period of Gastrodia elata	110.490
	SRR5643528	five period of Gastrodia elata	108.120
	SRR5643658	five period of Gastrodia elata	92.750
	SRR5643659	five period of Gastrodia elata	114.340
	SRR5643660	five period of Gastrodia elata	106.990
	SRR5643661	five period of Gastrodia elata	120.640
	SRR5643662	five period of Gastrodia elata	115.650
	SRR5643663	five period of Gastrodia elata	114.250
	SRR5643664	five period of Gastrodia elata	82.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	91.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	95.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	97.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	74.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	73.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	68.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	81.220
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	83.500
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	128.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	111.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	106.460
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	106.460
SRP279888	Gastro	Gastrodia elata tuber	80.41
	Juven	Juvenile tuber	87.04
	Mother_Gastro	Mother tuber of Gastrodia elata	113.59
	Mother_Juven	Mother tuber of Juvenile	97.47