Gene detail

Detail information of GWHGAAEX003617/evm.TU.scaffold_139.29

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|13542321\|ref\|NP_112009.1\|	9.00E-74	RNA helicase (ERCC4-like) [Thermoplasma volcanium GSS1]
KOG	KOG0354	0	DEAD-box like helicase
nr	gi\|672116975\|ref\|XP_008781664.1\|	0	PREDICTED: Fanconi anemia group M protein [Phoenix dactylifera]
Swissprot	tr\|Q10HL3\|DCL2A_ORYSJ	1.00E-15	Endoribonuclease Dicer homolog 2a
trEMBL	tr\|A0A061FRW8\|A0A061FRW8_THECC	0	DEAD/DEAH box RNA helicase family protein, putative isoform 1 {ECO:0000313\|EMBL:EOY17249.1}
TAIR	AT1G35530	0	DEAD/DEAH box RNA helicase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	565817	607565	-

Transcript Sequence
>GWHTAAEX003617 CACGCTGAAGGGATCGAGCAGAGAGCCAGTCGATGTAGATGGCATCGCCCTCTCCGCATCTTGACGAAGAAGATTTCGACTGGGATGCGGCTGTTCGCGAGATTGATTATGCCTGCCAATCAGCTATTCCTTCTACCTCGAATGACGGCGAGGTTACTCCAATTACTCCGGTTATTGCGCTCACATCGTTTGGGAGCGGATTTTGCACTAGGCCGGCGGCAGTGCCATCATGCCGGACTTGGCAGACTACGCTTAATCGTTACATTAACAGTTTCACCAAAGGAAATAGTAAATCCAACCTTCAGGAGAGCGTGGCAGGGGCCTGCTTACCGAGAGAGGATAACTTCGAAGCAGGAGATAGAGCTCCCTCAGTTAGCATTGATCTTGAAGCTGCAAAAACATGGATTTATCCAGTTAATATCCCCCTTAGAGATTATCAATTTTCAATTGTCAAAAATGCACTATTTTCAAATACACTTGTCGTGTTGCCAACTGGTCTTGGCAAGACTCTCATTGCTGCTGTTGTGATGTACAACTACTTTAGATGGTTTCCTGAAGGTAAAATTGTCTTTTCTGCTCCATCACGGCCGCTTGTGATACAGCAGATCGAAGCATGTCATAATATTGTTGGGATTCCTCAGGAGTGGACAATTGATATGACAGGTCAGATGAGTCCTTCAAAAAGATCTAAGTTTTGGACAGCTAAAAGAGTATTTTTTGTCACTCCACAAGTGTTTGAAAAAGACATTCAATCTGGCATATGCTTAGCAAGTCAACTTGTCTGCTTGGTTTTTGATGAAGCTCATCGGGCCATGGGAAACTATTCTTACTGTGTTGCAGTTCGCGAGTTGATGGCCATTCGTGTGCAGCTAAGGATATTAGCCTTGAGTGCAACACCAGGATCTAAACAGCTAACAATTCAGAGTGTCATTGATAACTTGTGCATTTCAACCCTAGAGTATCGTCATGAAAGTGATCATGATGTAAGTTCATATGTGCATGGTAGGAAGCTTGAGTTAATTGAGGTTTCGATGGGCAAGGAAGCTATTGAAGTTAATGGCATGCTTTTACAGGCTATACAACCATTTGCTGCTCGCCTTTGTTCTCTTGGAGCACTTCCTCAAAGAGACTTTTCAACATTGAGTCCATCTGAATTGCTCAATTTAAGAGATAAATTTCGTCAAGCACCACCTCATAGCTTGCCTCATTCGAAGTATGGAGAAATAGAAGCCTATTTTTGTGCTCTCATTACTTTTTACCACATAAGAAAGCTACTTTCAAGTCATGGTATTCGGCCAGCATATGAGATGCTCCAGGAGAAATTGAACCGAGGATCATTTTCAAAGCTTGTTTCTAAGATTGATGTTTTCTGGAAAGCAAAACTTTTGATGCAACAATTCGTGTCTCATGGAGCTCCGACTCTCAAAATGGTGAAAATGTTGGAAATTTTGATTGATCATTTCAAAACAAAAAATTCTGATGGCTCGAGAGTGATCATTTTCACAAATTTCAGGGGAAGTGTTAGAGATATAATGAATTATTTGTCCGGCATTGGAGACATGATTAAAGCCACTGAGTTTATAGGGCAAAGCTCAGGTAAAACTTTGAAAGGGCAGACTCAGAAAGTGCAACAAGCTGTTTTAGAGAAGTTTCGATCAGGTGTATACAATGTCATTGTTGCAACATCAGTAGGTGAAGAAGGACTTGATATTATGGAGGTTGATCTTGTTATCTGCTTTGATGCCAATGTATCACCACTGAGAATGATCCAGCGCATGGGAAGGACTGGAAGAAAGAATGATGGCAGAGTTGTTGTTCTAGCTTGTGAAGGATCTGAGCTAAAGGCTTACTTGAAGAAAAAAGCTAGCAGCAAAGCTATTAGGAAGCATTTGCATAATGGAGGAATTAAAAGCTTTAATTTCCATCCCAGTCCAAGAATGGTTCCACATATATGTAAACCTCAAGTGCAATATCTTGAAATGTCAATAGAGCAGTTCATTCCCCGTGGAAAGAAGGCAAAAAATGATACTATGGACAAATCACCACTGTCACTAACTATATCTAATGAAGAATTAAGTTCAATTTCCAAGTACTTCTCTCAATCTGGAGACATGACACGGAAACGATCTCTTATTGCCTTCCCCAGTTTTCAGGCGTTTCCTTCTCAAGTAGGTAGAGTGAGACATTCATTTAGAACAACGGCGATGTTCATTGATGCCATGCAAGATCTTCAAGGACTGTCATTTTCTAAAGTAAATAAAGATAAATTTATTCAGATCGAGAACTCAAGCCAACCACATAACGAACTTTGTGCTTCCCCTTGTAATATTAGACAAGGCACTGTTTACTGTCGCACTGGAGACGTTGATTTACCTGCCGTCGTTCTAGTATCGGCTAGCGAATATTTAGACAATAAAGTTGGTTCTCATATAACTCATCTCGATATCCAGAAACCTAAACCTCATTGTTTCCTCTTTAGCGAAGGTTCTGTGAGTATAAATACAATTGGAAGAGTCCTCGTTCACTATGTTCCTGTCATCCAGCATAAAGGGTCCAAATATTCCGAAGATATTTTACTCGAAAACCCTTTATCTATTGAAGAACCTAAAGTCAACCCCTCCACTGATCTTCAGCAATCAGGCAACGGACTGCCATCTAGTTTGCTTATTCAAGCCAACCAAAATGAGCAAGAGAACTTGAAACATTCATTTCAAACGGGTGTTAGTAAGCTTAAACATACAGAATTAGATTCACCTTTTGAAGTTAATGATGATATGGAAGAAACTTTGCCTACATCTATTGGTAGATCGAGAAATGAAGCAGATGACATTGAGCTGAGCCCCAGATTAACTCATTTCATTGAGGAAGGCATTGTTCCGGAGTCTCCTGTTCTAAACAATAATCAACTGTTAGCTGATGATAAAAAGTATGGTTTAAGCTGCTCATTGGAGATTGATAAAGACACTCTCTTTGTGAATAAGCTTTCGAGCAACGGCATTGCAGGGTGCTCTGACTTGCCATCTAAGGAAAATAGTATGCATGAGAAGGTCATGGGAAGAGTGAAGAATACTTTATCTGAAAGCACATATGATGGGAATACTATCTATACAACAGATGAGGCAGTTCATACTCCTAATGCAGTAAATGAGGCAGTGCATGCTCCTACTACAATAAATGAGACAGTTAACACTCCTAATACAGTAAAAGAAGCAGTTCACACTCCTAGTATAACGCTTCGAAGCTCAAGTGAGAATTGGAAATGCAGTTCTGGAGAAGCCTCAACTTCTTTCTTTAGAGCTGCTAAATACAAGCGATTGCGCAAAAATGGAGATGCAGCAGTAATAAAGCTTCCTGCCAAGACTTTGAACGAAAGATTTAAATTGTCTGAAGAAGGCCATGGCATCACTACGAGTAGTCAAGCGAACAAATCACAGTTCAGCAATGGTGGGAAAGAAAAAGCAAACGGACATGTGGGAGTCTTCATTGACGAGGAAGCTGAGGTGTCAGGCGATGCATCAGTTTCAGAGGATGAAATTGATATTGAAAAGAATGACCAATATGATGTTAGCTTTATAGATGATAGGATAAGTCCAACTGAAGGATCTGCAGAAGCAGAAAAGAGTGAAGTTGACATGATAGCTTTTTACAGGCGCTCTCTGCTCACCCAATCACCCATTATATTTCAAGAAAAATATCAGCCAGCGTCTCCGGAGTCTCCCTCTTCAGGAACATACAATCTTCTTGACAACGAGTTAGAGAAGGAGAACAAGAAAAATAAGAGGAAGATAGTTTTTCAGCCTTCAGGCAGCCCCACACAAGAAGAGAACTTTCTTCCATGTGATGATGATTTTTATGAAGGGCTCGACCTTGATGAGGTCGAGGCTCAAGCAACCGAGCTCTTGAGATGCAAATCTGAGTCTTTTAGGAAATCACAGCCTGCGCTTGCTGAGAAGGGTAAAGGTGCTGATATTGGCTTCATCTGCTCGCCTTCATTTGATTTGGGATTCTGAGTTCTCCTTAAAAAGGATAAATTATAAGGCTAATAAAAGGGAGATTGGCTTCATTCACTTGAGTATAGGTTTTGCATTTTTTCTCCCTTTTTAATAGCTTTTTAGGAGAAATATTGCATTTTATAGAGAAGAAAGAGAAAATGTGTAGTATTTATGAAACTTGTTTTCTTCCAGAAATATTGAATGTAGTGATTTTTTTGTGTTGTATATTGTTTGTTGAATAATGCTTTGCAATAAGAGATGTATGTATGTATATATGGATAATAATATCAATAAAAAGTAAAGAAGACTGGC

Network for GWHGAAEX003617

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04851.14	ResIII	129	287	1.50E-16
PF00271.30	Helicase_C	468	586	4.10E-20

Protein Sequence

>GWHPAAEX003617
MASPSPHLDEEDFDWDAAVREIDYACQSAIPSTSNDGEVTPITPVIALTSFGSGFCTRPAAVPSCRTWQTTLNRYINSFTKGNSKSNLQESVAGACLPREDNFEAGDRAPSVSIDLEAAKTWIYPVNIPLRDYQFSIVKNALFSNTLVVLPTGLGKTLIAAVVMYNYFRWFPEGKIVFSAPSRPLVIQQIEACHNIVGIPQEWTIDMTGQMSPSKRSKFWTAKRVFFVTPQVFEKDIQSGICLASQLVCLVFDEAHRAMGNYSYCVAVRELMAIRVQLRILALSATPGSKQLTIQSVIDNLCISTLEYRHESDHDVSSYVHGRKLELIEVSMGKEAIEVNGMLLQAIQPFAARLCSLGALPQRDFSTLSPSELLNLRDKFRQAPPHSLPHSKYGEIEAYFCALITFYHIRKLLSSHGIRPAYEMLQEKLNRGSFSKLVSKIDVFWKAKLLMQQFVSHGAPTLKMVKMLEILIDHFKTKNSDGSRVIIFTNFRGSVRDIMNYLSGIGDMIKATEFIGQSSGKTLKGQTQKVQQAVLEKFRSGVYNVIVATSVGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNDGRVVVLACEGSELKAYLKKKASSKAIRKHLHNGGIKSFNFHPSPRMVPHICKPQVQYLEMSIEQFIPRGKKAKNDTMDKSPLSLTISNEELSSISKYFSQSGDMTRKRSLIAFPSFQAFPSQVGRVRHSFRTTAMFIDAMQDLQGLSFSKVNKDKFIQIENSSQPHNELCASPCNIRQGTVYCRTGDVDLPAVVLVSASEYLDNKVGSHITHLDIQKPKPHCFLFSEGSVSINTIGRVLVHYVPVIQHKGSKYSEDILLENPLSIEEPKVNPSTDLQQSGNGLPSSLLIQANQNEQENLKHSFQTGVSKLKHTELDSPFEVNDDMEETLPTSIGRSRNEADDIELSPRLTHFIEEGIVPESPVLNNNQLLADDKKYGLSCSLEIDKDTLFVNKLSSNGIAGCSDLPSKENSMHEKVMGRVKNTLSESTYDGNTIYTTDEAVHTPNAVNEAVHAPTTINETVNTPNTVKEAVHTPSITLRSSSENWKCSSGEASTSFFRAAKYKRLRKNGDAAVIKLPAKTLNERFKLSEEGHGITTSSQANKSQFSNGGKEKANGHVGVFIDEEAEVSGDASVSEDEIDIEKNDQYDVSFIDDRISPTEGSAEAEKSEVDMIAFYRRSLLTQSPIIFQEKYQPASPESPSSGTYNLLDNELEKENKKNKRKIVFQPSGSPTQEENFLPCDDDFYEGLDLDEVEAQATELLRCKSESFRKSQPALAEKGKGADIGFICSPSFDLGF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10896	FANCM	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0016787	Molecular Function	hydrolase activity
GO:0003677	Molecular Function	DNA binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.230
SRP064423	SRR2545915	Juvenile tuber	2.770
SRP108465	SRR5643513	five period of Gastrodia elata	1.300
	SRR5643514	five period of Gastrodia elata	2.120
	SRR5643515	five period of Gastrodia elata	1.580
	SRR5643524	five period of Gastrodia elata	1.090
	SRR5643525	five period of Gastrodia elata	0.680
	SRR5643528	five period of Gastrodia elata	1.230
	SRR5643658	five period of Gastrodia elata	1.310
	SRR5643659	five period of Gastrodia elata	0.380
	SRR5643660	five period of Gastrodia elata	0.260
	SRR5643661	five period of Gastrodia elata	0.560
	SRR5643662	five period of Gastrodia elata	0.440
	SRR5643663	five period of Gastrodia elata	0.260
	SRR5643664	five period of Gastrodia elata	0.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.980
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.740
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.190
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.400
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.400
SRP279888	Gastro	Gastrodia elata tuber	0.88
	Juven	Juvenile tuber	0.82
	Mother_Gastro	Mother tuber of Gastrodia elata	1.24
	Mother_Juven	Mother tuber of Juvenile	0.83