Detail information of GWHGAAEX003620/evm.TU.scaffold_139.33
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297527485|ref|YP_003669509.1| | 1.00E-09 | hypothetical protein Shell_1522 [Staphylothermus hellenicus DSM 12710] |
| KOG | KOG1781 | 5.00E-58 | Small Nuclear ribonucleoprotein splicing factor |
| nr | gi|720074390|ref|XP_010279005.1| | 5.72E-62 | PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Nelumbo nucifera] |
| Swissprot | tr|Q9SI54|LSM7_ARATH | 2.00E-58 | Sm-like protein LSM7 {ECO:0000305} |
| trEMBL | tr|V7CN49|V7CN49_PHAVU | 1.00E-61 | Uncharacterized protein {ECO:0000313|EMBL:ESW30655.1} |
| TAIR | AT2G03870 | 5.00E-58 | Small nuclear ribonucleoprotein family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000135 | 713619 | 733497 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003620
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01423.21 | LSM | 10 | 82 | 6.20E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12626 | LSM7 | Biosynthesis of secondary metabolites | map01110 |
| Spliceosome | map03040 | ||
| RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome |
| GO:0000956 | Biological Process | nuclear-transcribed mRNA catabolic process |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 39.280 |
| SRR2545915 | Juvenile tuber | 32.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.760 |
| SRR5643514 | five period of Gastrodia elata | 40.270 | |
| SRR5643515 | five period of Gastrodia elata | 35.590 | |
| SRR5643524 | five period of Gastrodia elata | 36.450 | |
| SRR5643525 | five period of Gastrodia elata | 37.960 | |
| SRR5643528 | five period of Gastrodia elata | 36.420 | |
| SRR5643658 | five period of Gastrodia elata | 31.960 | |
| SRR5643659 | five period of Gastrodia elata | 44.820 | |
| SRR5643660 | five period of Gastrodia elata | 40.520 | |
| SRR5643661 | five period of Gastrodia elata | 44.220 | |
| SRR5643662 | five period of Gastrodia elata | 40.700 | |
| SRR5643663 | five period of Gastrodia elata | 37.980 | |
| SRR5643664 | five period of Gastrodia elata | 34.740 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 36.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 32.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 46.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 31.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 38.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 35.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 55.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 49.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 56.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 56.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 47.86 |
| Juven | Juvenile tuber | 41.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.46 | |
| Mother_Juven | Mother tuber of Juvenile | 35.05 |