Detail information of GWHGAAEX003621/evm.TU.scaffold_139.34


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428314664|ref|YP_007125557.1|5.00E-10WD40 repeat-containing protein [Microcoleus sp. PCC 7113]
KOGKOG23940WD40 protein DMR-N9
nrgi|672121821|ref|XP_008784217.1|0PREDICTED: dystrophia myotonica WD repeat-containing protein-like isoform X1 [Phoenix dactylifera]
trEMBLtr|M0RIM3|M0RIM3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P15980_001}
TAIRAT3G533900Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000135768177803896+
Transcript Sequence

Network for GWHGAAEX003621

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD402813190.036
PF00400.31WD403363610.0011
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.550
SRR2545915Juvenile tuber17.660
SRP108465SRR5643513five period of Gastrodia elata23.540
SRR5643514five period of Gastrodia elata23.650
SRR5643515five period of Gastrodia elata24.100
SRR5643524five period of Gastrodia elata22.230
SRR5643525five period of Gastrodia elata32.560
SRR5643528five period of Gastrodia elata27.860
SRR5643658five period of Gastrodia elata30.560
SRR5643659five period of Gastrodia elata19.800
SRR5643660five period of Gastrodia elata17.480
SRR5643661five period of Gastrodia elata19.020
SRR5643662five period of Gastrodia elata20.660
SRR5643663five period of Gastrodia elata17.940
SRR5643664five period of Gastrodia elata19.690
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.040
SRR6049655Rhizomagastrodiae_C368-T10_good_121.130
SRR6049656Rhizomagastrodiae_C368-T07_good_123.260
SRR6049657Rhizomagastrodiae_C368-T07_good_123.130
SRR6049658Rhizomagastrodiae_C368-T04_good_122.670
SRR6049659Rhizomagastrodiae_C368-T04_good_124.680
SRR6049660Rhizomagastrodiae_C368-T01_good_122.990
SRR6049661Rhizomagastrodiae_C368-T04_good_122.010
SRR6049662Rhizomagastrodiae_C368-T01_good_123.340
SRR6049663Rhizomagastrodiae_C368-T01_good_124.260
SRR6049664Rhizomagastrodiae_C368-T10_good_125.910
SRR6049665Rhizomagastrodiae_C368-T10_good_125.910
SRP279888GastroGastrodia elata tuber 20.06
JuvenJuvenile tuber29.28
Mother_GastroMother tuber of Gastrodia elata 42.55
Mother_JuvenMother tuber of Juvenile 45.99