Gene detail

Detail information of GWHGAAEX003622/CADD00325.1.gene

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|268315832\|ref\|YP_003289551.1\|	2.00E-122	class I and II aminotransferase [Rhodothermus marinus DSM 4252]
KOG	KOG0257	7.00E-178	Kynurenine aminotransferase, glutamine transaminase K
nr	gi\|672120279\|ref\|XP_008783401.1\|	0	PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like [Phoenix dactylifera]
Swissprot	tr\|E9L7A5\|PAT_PETHY	0	Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase (Precursor)
trEMBL	tr\|M0T1T0\|M0T1T0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P26050_001}
TAIR	AT2G22250	7.00E-178	aspartate aminotransferase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	815692	828340	-

Transcript Sequence
>GWHTAAEX003622 CGGACATTTAGATAACATTATCAACAGACCTGTAACATAGCATATAGGCGAATCTATGGCGAATCTATGCCGCCGAAGCGCGGCATATGAGCAGGTGTCCCAGCAATTGGCTCTGCAATCTCTATTCTTTTCATCGCTTCCTCGATTCCTTTCCATAGCCGCTTCCTCCATCCTGCGCTCTCCCTCGCACGTTTCTCTCTTCCTCGGCCTCCCGCCAACCGTTCACTGCTTCAAATATAGACGGATCTCTCTGGTTCGACCATGGCCGCGGCGAGCTTCGATTCCCTGTCCTCAGATCGCGTGACTTCGTCCCTCGATCTGTCAGTGAGTCCAAGGGTGAGCGCCGTCAAGCCCTCTAAGACCATCGCCATCACCGATCAGGCCCTCGCTCTTGTCCAGGCTGGCGTTCCCGTCATTCGTCTCGCGGCCGGTGAGCCGGATTTTGGCACCCCTGCTGTCATTGCAGAGGCAGGTATCAATGCGATTCGCGAGGGATTCACGAGGTATACACCGAATGCCGGAACCGTGGAGCTCAGGAAAGCTATTTGTCGTAAGCTGGAAGAGGAGAATGGATTGGTTTACAAACCTGATGAGATACTGGTCAGTAATGGTGCAAAGCAGTGCATCATGCAAGCAGTGATGGGTGTTTGTTCTCCAGGGGATGAGGTTATAATTCCAGCGCCATTCTGTGTCAGCTTTCCTGAGATGGTTAGGTTGGCAGATGCAACTCCAGTTATTATCCCTACAGATATATCAGATAACTTTCTCTTGAATCCGAAGGTTCTTGCCTCCCAGCTTAATAAGAAATCAAGGTTGCTAATTATTTGCTCTCCGTCCAATCCGACGGGATCAGTATATCACAAAGAGCTGCTTGAGGAGATTGCGGACATTATTAGAAAGCATCCCCGGCTTCTAGCTTTTGCAATGACTGGTTGGAGACTTGGATATCTCGCCTCTCATAAGCATTTTGTTGTAGCATGTGGGAAGATACAAAGCCAGGCCGCATCAGGTGCAAGCAGCATCTCTCAGAAGGCAGGGCTGGCGGCCCTGTGTATGGGATATGCGGGCGGCGAAGCTGTTGCCGCCATGGTAAAGGCCTTCCAGGAGCGCCGAGACATCCTCGTCAGGAGCTTTAAGGAACTGGGTGGTGTTAGGATGTCGGAGCCCCAGGGCGCTTTCTATCTCTTCGTTGATTGTAGTTCTTATTATGGAATTGAAGTCGAAGGCTTTGGGGGTATCAATAACTCGGAATCCCTCTGCAGGTTTCTTTTGGAGAAAGCACATGTAGCTGTTGTTCCCGGAGAGGCCTTTGGTGACGATAGGTGCATAAGGATTTCTTATGCAGCATCATCGCTGGCAACACTGGAGAATGGGGTGAGTAAAATAAAAGAGGCATTGCTGCTTCTTAGGCGTCCCATTCCCGCTTGATAAAAGAAAAATAATGGAAAATTTTGGCAAAATATCCCCTAAATCATTTCAATTTGATCACTTTATTTCCCCCTCATCTATATACTGACCCAAATTGAAAATTTGGGATTAAATTAGGATTAACAATTTCTCTGCTTTAAATAATTTAGGGGTAATTTTGCCAAGTTGCATGCTGTCTTATAAAGAGGTTGTCTTTTCTCTGTTTAATATATAAATGTGATATTTATTTTCTGTGCATTATTAGTATGATTTGTATCAAATTATATATATATATATATATATATATATATATGTACACACACAAGCATGA

Network for GWHGAAEX003622

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.20	Aminotran_1_2	134	301	8.50E-30
PF00155.20	Aminotran_1_2	303	459	4.20E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15849	PAT, AAT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Biosynthesis of amino acids	map01230
		Tyrosine metabolism	map00350
		Phenylalanine metabolism	map00360
		Tryptophan metabolism	map00380
		Isoquinoline alkaloid biosynthesis	map00950

Gene Ontology

GO term	Ontology	Name
GO:0009058	Biological Process	biosynthetic process
GO:0030170	Molecular Function	pyridoxal phosphate binding
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.740
SRP064423	SRR2545915	Juvenile tuber	12.790
SRP108465	SRR5643513	five period of Gastrodia elata	4.670
	SRR5643514	five period of Gastrodia elata	6.590
	SRR5643515	five period of Gastrodia elata	5.640
	SRR5643524	five period of Gastrodia elata	4.290
	SRR5643525	five period of Gastrodia elata	10.140
	SRR5643528	five period of Gastrodia elata	5.690
	SRR5643658	five period of Gastrodia elata	5.680
	SRR5643659	five period of Gastrodia elata	6.620
	SRR5643660	five period of Gastrodia elata	8.890
	SRR5643661	five period of Gastrodia elata	8.470
	SRR5643662	five period of Gastrodia elata	8.870
	SRR5643663	five period of Gastrodia elata	11.060
	SRR5643664	five period of Gastrodia elata	8.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.540
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.890
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.750
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.150
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.150
SRP279888	Gastro	Gastrodia elata tuber	10.37
	Juven	Juvenile tuber	6.29
	Mother_Gastro	Mother tuber of Gastrodia elata	13.76
	Mother_Juven	Mother tuber of Juvenile	20.62