Gene detail

Detail information of GWHGAAEX003631/evm.TU.scaffold_139.42

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|521459511\|ref\|YP_008152858.1\|	1.00E-73	long-chain fatty acid--CoA ligase [Sorangium cellulosum So0157-2]
KOG	KOG1180	0	Acyl-CoA synthetase
nr	gi\|672121791\|ref\|XP_008784201.1\|	0	PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic-like [Phoenix dactylifera]
Swissprot	tr\|Q9CAP8\|LACS9_ARATH	0	Long chain acyl-CoA synthetase 9, chloroplastic
trEMBL	tr\|M0TUX9\|M0TUX9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P30270_001}
TAIR	AT1G77590	0	long chain acyl-CoA synthetase 9

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	956242	970078	+

Transcript Sequence
>GWHTAAEX003631 CTTTCTGTATTCATCTTAAATATCAGCTTGTTTGCATTTTGTCCTAAAATTTTTTGATTTATCAAATCCTGGACGAATTTTAACATAGTTTAGGGCTTACACTATTTATTTATCTCCTTATATTTCAATGTCTCATCAGTTGCTTGGAGTCACTTGTGTTGATGCCAGTTTTTGGACGGTTTTTGGCAGGTTGTACCAATGAATCCATATATTGTCGGCGCTATTCTGCCCGTTGTGCTCTCATTGATTCTCCAAAAAACGAAGGGGAGGAAGAACCGTGGTTTGCCAGTTGATGTTGGTGGAGAGCCTGGATTTACTCTCAGGAGTAGCCGTTTTGAAATCCCTGTGGAGTCACTCTGGGAAGGAGTCTCAACCTTAGCTGAGTTGTTTGAGCATTCCTGCAAGCGGTTCTTTAATAAGCCCTTTCTTGGAACTAGAAAGCTTATTTCTAAGGAAACTGAAAAGAGTCAGGATGGCAGATCCTTTGAAAAGCTTCATCTAGGGAATTTCGAATGGATAAGTTATGCTCAAGCATTTGATACTATATGCAATTTTGCATCTGGCCTAATCCAACTTGGTCACAAAAAGGAAGAGCGTGTTGCCATCTTTGCTGAGACACAGGCACAGTGGCAGATTTCCTTACAGGCCTGTTTCCGGCAAAATATCACTGTAGTTACCATGTACTCTTCTTTAGGAGAGGAAGCTCTTTGCCACTCTTTAAACGAGACAGAAGTTACAACTGTAATATGCGGCTGCAAAGAATTGAAAAAGCTCATTGACATAAGCAGACAACTTGATACTGTAAAACATGTAATTTGGATGAATGAGGATGGCATTTCAAATGAAATTTCACTGTTCAAGAAAGCTACTTCTTGGGAGATTTCATCTTTTGCTGAAGTAGAGAAACTAGGCCAGGAAAATCCTGTTGAAGCAAATTTGCCTCTTTCAGCCGACATTGCTGTCATAATGTACACTAGCGGGAGTACTGGCGTACCTAAGGGGGTAATGATGTCACATGGGAATGTTTTATCTACAGTTGCTGCAGTTGTGACAATTGTACCTGGGATTAGCAGTAAAGATGTTTACATGGCTTACTTGCCGCTCGCTCACATCTTTGAGTTAGCGGCAGAGTTTGTAATGATTGCTGCTGGAGCCTCTATTGGATACGGTTCTCCTCTGACCCTTACTGATACATCAAACAAAATAAAGAAGGGAACAAAGGGTGATGCCTCTGTTTTAGGACCTACTTTAATGGCTGCTGTACCTGCCATTCTTGACCGGGTTCGAGATGGTGTGCGAAAAAATGTAAATGCAAAGGGTGGCTTAGCAAAGAGGTTTTTTGACATTGGATATAGTCGTAGGCTTGCTGCAGTTAATGGAAGTTGGCTTGGTGCATGGGGCCTGGAAAAACTGTTGCTGGATTTTCTGGTATTTAGCAAAGTTCAGGCGATTTTGGGGGGACAGGTTCGTTATATACTTTCTGGAGGGGCTCCTCTCTCTGGAGACACCCAAAGGTTCATCAACATATGCTTGGGGGCTCCAATTGGGCAGGCGTATGGACTGACCGAAACTTGCGCCGGAGGCACGTTCTCTGAATCTGACGACACATCAGTTGGTCGAGTCGGTCCTCCACTTCCCTGCTCATATGTTAAGAGAAATGCCTTTACGAGGCTAACTAGCATGGTTTCCATTTTACATAAAAAGCTCGATGAAAGAGGGGTGCGGTGGTTCTACACCGGCGACATTGGGTGCATTCATTCTGATGGCTGCCTTGAAATCATTGATCGGAAAAAGGATATCGTTAAGCTTCAACATGGCGAATATGTTTCGTTGGGAAAGGTGGAGGTAGCTCTCATGGTGAGCCCATACGTGGACAACATCTTGCTGCATGCCGATCCGTTTCAAAGCTACTGTGTGGCCCTTATCACCCCGGTGTCGCATGCCCTGGAGAGCTGGGCTCAGAAGCAGGGGATTTCTTACAGCAGCTTTTCTGATCTCTGCCAAAAGGAAGAGGCTGTCAAAGAAGTCAGTGCTTCACTAACAAAGGCCGCGCGAGAATCGCGTTTGGAGAAGTTTGAGATTCCTGCAAGAATCGGTCTGCTGCCGGAACCGTGGACGCCCGAATCCGGCTTCGTGACGGCCGCCCTGAAAATCAAGCGAGAAGCCCTTAGAAAGGCGTTCGCGGCAGAGCTCACCAATTTATACGCCTGA

Network for GWHGAAEX003631

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00501.27	AMP-binding	103	485	6.20E-73
PF00501.27	AMP-binding	502	538	1.80E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01897	ACSL, fadD	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Fatty acid degradation	map00071
		Peroxisome	map04146
		Ferroptosis	map04216
		Quorum sensing	map02024
		Adipocytokine signaling pathway	map04920
		PPAR signaling pathway	map03320
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	93.360
SRP064423	SRR2545915	Juvenile tuber	97.470
SRP108465	SRR5643513	five period of Gastrodia elata	128.720
	SRR5643514	five period of Gastrodia elata	115.650
	SRR5643515	five period of Gastrodia elata	113.500
	SRR5643524	five period of Gastrodia elata	116.770
	SRR5643525	five period of Gastrodia elata	119.670
	SRR5643528	five period of Gastrodia elata	109.120
	SRR5643658	five period of Gastrodia elata	116.880
	SRR5643659	five period of Gastrodia elata	57.450
	SRR5643660	five period of Gastrodia elata	60.420
	SRR5643661	five period of Gastrodia elata	109.120
	SRR5643662	five period of Gastrodia elata	60.330
	SRR5643663	five period of Gastrodia elata	64.250
	SRR5643664	five period of Gastrodia elata	70.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	119.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	109.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	109.560
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	123.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	123.630
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	139.300
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	116.730
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	114.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	98.380
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	101.270
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	98.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	98.640
SRP279888	Gastro	Gastrodia elata tuber	86.52
	Juven	Juvenile tuber	134.07
	Mother_Gastro	Mother tuber of Gastrodia elata	98.02
	Mother_Juven	Mother tuber of Juvenile	121.33