Detail information of GWHGAAEX003633/evm.TU.scaffold_139.44
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1190 | 0 | Polypyrimidine tract-binding protein |
| nr | gi|359480735|ref|XP_002277938.2| | 0 | PREDICTED: polypyrimidine tract-binding protein homolog 3-like isoform X1 [Vitis vinifera] |
| Swissprot | tr|Q6ICX4|PTBP3_ARATH | 0 | Polypyrimidine tract-binding protein homolog 3 |
| trEMBL | tr|F6H4C6|F6H4C6_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB47137.1} |
| TAIR | AT1G43190 | 0 | polypyrimidine tract-binding protein 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000135 | 975823 | 1002890 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003633
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 9 | 60 | 1.10E-05 |
| PF13893.5 | RRM_5 | 98 | 182 | 0.12 |
| PF13893.5 | RRM_5 | 241 | 337 | 2.60E-30 |
| PF00076.21 | RRM_1 | 372 | 436 | 1.30E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006397 | Biological Process | mRNA processing |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 65.740 |
| SRR2545915 | Juvenile tuber | 35.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.180 |
| SRR5643514 | five period of Gastrodia elata | 25.590 | |
| SRR5643515 | five period of Gastrodia elata | 20.350 | |
| SRR5643524 | five period of Gastrodia elata | 21.470 | |
| SRR5643525 | five period of Gastrodia elata | 47.200 | |
| SRR5643528 | five period of Gastrodia elata | 41.260 | |
| SRR5643658 | five period of Gastrodia elata | 44.780 | |
| SRR5643659 | five period of Gastrodia elata | 24.450 | |
| SRR5643660 | five period of Gastrodia elata | 29.020 | |
| SRR5643661 | five period of Gastrodia elata | 26.560 | |
| SRR5643662 | five period of Gastrodia elata | 26.810 | |
| SRR5643663 | five period of Gastrodia elata | 26.100 | |
| SRR5643664 | five period of Gastrodia elata | 30.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.220 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.240 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.050 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.12 |
| Juven | Juvenile tuber | 27.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.55 | |
| Mother_Juven | Mother tuber of Juvenile | 33.83 |